The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

por Wilkinson, Mark D, Vandervalk, Benjamin, McCarthy, Luke
Publicado 2011

ntHash: recursive nucleotide hashing

por Mohamadi, Hamid, Chu, Justin, Vandervalk, Benjamin P., Birol, Inanc
Publicado 2016

SADI, SHARE, and the in silico scientific method

por Wilkinson, Mark D, McCarthy, Luke, Vandervalk, Benjamin, Withers, David, Kawas, Edward, Samadian, Soroush
Publicado 2010

Kollector: transcript-informed, targeted de novo assembly of gene loci

por Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Hammond, S Austin, Warren, René L, Birol, Inanc
Publicado 2017

Kollector: transcript-informed, targeted de novo assembly of gene loci

por Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Austin Hammond, S, Warren, René L, Birol, Inanc
Publicado 2017

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

por Khan, Hamza, Mohamadi, Hamid, Vandervalk, Benjamin P, Warren, Rene L, Chu, Justin, Birol, Inanc
Publicado 2018

Sealer: a scalable gap-closing application for finishing draft genomes

por Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
Publicado 2015

DIDA: Distributed Indexing Dispatched Alignment

por Mohamadi, Hamid, Vandervalk, Benjamin P, Raymond, Anthony, Jackman, Shaun D, Chu, Justin, Breshears, Clay P, Birol, Inanc
Publicado 2015

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

por Coombe, Lauren, Zhang, Jessica, Vandervalk, Benjamin P., Chu, Justin, Jackman, Shaun D., Birol, Inanc, Warren, René L.
Publicado 2018

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads

por Warren, René L., Yang, Chen, Vandervalk, Benjamin P., Behsaz, Bahar, Lagman, Albert, Jones, Steven J. M., Birol, Inanç
Publicado 2015

Spaced Seed Data Structures for De Novo Assembly

por Birol, Inanç, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D., Raghavan, Karthika, Vandervalk, Benjamin P., Raymond, Anthony, Warren, René L.
Publicado 2015

Konnector v2.0: pseudo-long reads from paired-end sequencing data

por Vandervalk, Benjamin P, Yang, Chen, Xue, Zhuyi, Raghavan, Karthika, Chu, Justin, Mohamadi, Hamid, Jackman, Shaun D, Chiu, Readman, Warren, René L, Birol, Inanç
Publicado 2015

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

por Jackman, Shaun D., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Yeo, Sarah, Hammond, S. Austin, Jahesh, Golnaz, Khan, Hamza, Coombe, Lauren, Warren, Rene L., Birol, Inanc
Publicado 2017

Tigmint: correcting assembly errors using linked reads from large molecules

por Jackman, Shaun D., Coombe, Lauren, Chu, Justin, Warren, Rene L., Vandervalk, Benjamin P., Yeo, Sarah, Xue, Zhuyi, Mohamadi, Hamid, Bohlmann, Joerg, Jones, Steven J.M., Birol, Inanc
Publicado 2018

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data

por Coombe, Lauren, Warren, René L., Jackman, Shaun D., Yang, Chen, Vandervalk, Benjamin P., Moore, Richard A., Pleasance, Stephen, Coope, Robin J., Bohlmann, Joerg, Holt, Robert A., Jones, Steven J. M., Birol, Inanc
Publicado 2016

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

por Jackman, Shaun D., Warren, René L., Gibb, Ewan A., Vandervalk, Benjamin P., Mohamadi, Hamid, Chu, Justin, Raymond, Anthony, Pleasance, Stephen, Coope, Robin, Wildung, Mark R., Ritland, Carol E., Bousquet, Jean, Jones, Steven J. M., Bohlmann, Joerg, Birol, Inanç
Publicado 2015

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

por Hammond, S. Austin, Warren, René L., Vandervalk, Benjamin P., Kucuk, Erdi, Khan, Hamza, Gibb, Ewan A., Pandoh, Pawan, Kirk, Heather, Zhao, Yongjun, Jones, Martin, Mungall, Andrew J., Coope, Robin, Pleasance, Stephen, Moore, Richard A., Holt, Robert A., Round, Jessica M., Ohora, Sara, Walle, Branden V., Veldhoen, Nik, Helbing, Caren C., Birol, Inanc
Publicado 2017

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

por Birol, Inanc, Raymond, Anthony, Jackman, Shaun D., Pleasance, Stephen, Coope, Robin, Taylor, Greg A., Yuen, Macaire Man Saint, Keeling, Christopher I., Brand, Dana, Vandervalk, Benjamin P., Kirk, Heather, Pandoh, Pawan, Moore, Richard A., Zhao, Yongjun, Mungall, Andrew J., Jaquish, Barry, Yanchuk, Alvin, Ritland, Carol, Boyle, Brian, Bousquet, Jean, Ritland, Kermit, MacKay, John, Bohlmann, Jörg, Jones, Steven J.M.
Publicado 2013