Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis

por Varadan, Vinay, Anastassiou, Dimitris
Publicado 2006

Variable window binding for mutually exclusive alternative splicing

por Anastassiou, Dimitris, Liu, Hairuo, Varadan, Vinay
Publicado 2006

Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1

por Kim, Hoon, Watkinson, John, Varadan, Vinay, Anastassiou, Dimitris
Publicado 2010

Network-Based Enriched Gene Subnetwork Identification: A Game-Theoretic Approach

por Razi, Abolfazl, Afghah, Fatemeh, Singh, Salendra, Varadan, Vinay
Publicado 2016

PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment

por Janevski, Angel, Kamalakaran, Sitharthan, Banerjee, Nilanjana, Varadan, Vinay, Dimitrova, Nevenka
Publicado 2009

Effective normalization for copy number variation detection from whole genome sequencing

por Janevski, Angel, Varadan, Vinay, Kamalakaran, Sitharthan, Banerjee, Nilanjana, Dimitrova, Nevenka
Publicado 2012

Major Chromosomal Breakpoint Intervals in Breast Cancer Co-Localize with Differentially Methylated Regions

por Eric Tang, Man-Hung, Varadan, Vinay, Kamalakaran, Sitharthan, Zhang, Michael Q., Dimitrova, Nevenka, Hicks, James
Publicado 2012

Global DNA methylation patterns in Barrett’s esophagus, dysplastic Barrett’s, and esophageal adenocarcinoma are associated with BMI, gender, and tobacco use

por Kaz, Andrew M., Wong, Chao-Jen, Varadan, Vinay, Willis, Joseph E., Chak, Amitabh, Grady, William M.
Publicado 2016

Erratum to: Global DNA methylation patterns in Barrett’s esophagus, dysplastic Barrett’s, and esophageal adenocarcinoma are associated with BMI, gender, and tobacco use

por Kaz, Andrew M., Wong, Chao-Jen, Varadan, Vinay, Willis, Joseph E., Chak, Amitabh, Grady, William M.
Publicado 2017

The DNMT1-associated lincRNA DACOR1 reprograms genome-wide DNA methylation in colon cancer

por Somasundaram, Saigopal, Forrest, Megan E, Moinova, Helen, Cohen, Allison, Varadan, Vinay, LaFramboise, Thomas, Markowitz, Sanford, Khalil, Ahmad M
Publicado 2018

Identification of Tumor Suppressors and Oncogenes from Genomic and Epigenetic Features in Ovarian Cancer

por Wrzeszczynski, Kazimierz O., Varadan, Vinay, Byrnes, James, Lum, Elena, Kamalakaran, Sitharthan, Levine, Douglas A., Dimitrova, Nevenka, Zhang, Michael Q., Lucito, Robert
Publicado 2011

ENVE: a novel computational framework characterizes copy-number mutational landscapes in colorectal cancers from African American patients

por Varadan, Vinay, Singh, Salendra, Nosrati, Arman, Ravi, Lakshmeswari, Lutterbaugh, James, Barnholtz-Sloan, Jill S., Markowitz, Sanford D., Willis, Joseph E., Guda, Kishore
Publicado 2015

Biochemical and functional characterization of glycosylation-associated mutational landscapes in colon cancer

por Venkitachalam, Srividya, Revoredo, Leslie, Varadan, Vinay, Fecteau, Ryan E., Ravi, Lakshmeswari, Lutterbaugh, James, Markowitz, Sanford D., Willis, Joseph E., Gerken, Thomas A., Guda, Kishore
Publicado 2016

Interferon-beta represses cancer stem cell properties in triple-negative breast cancer

por Doherty, Mary R., Cheon, HyeonJoo, Junk, Damian J., Vinayak, Shaveta, Varadan, Vinay, Telli, Melinda L., Ford, James M., Stark, George R., Jackson, Mark W.
Publicado 2017

Radiogenomic analysis of hypoxia pathway is predictive of overall survival in Glioblastoma

por Beig, Niha, Patel, Jay, Prasanna, Prateek, Hill, Virginia, Gupta, Amit, Correa, Ramon, Bera, Kaustav, Singh, Salendra, Partovi, Sasan, Varadan, Vinay, Ahluwalia, Manmeet, Madabhushi, Anant, Tiwari, Pallavi
Publicado 2018

H3K9 methylation drives resistance to androgen receptor–antagonist therapy in prostate cancer

por Baratchian, Mehdi, Tiwari, Ritika, Khalighi, Sirvan, Chakravarthy, Ankur, Yuan, Wei, Berk, Michael, Li, Jianneng, Guerinot, Amy, de Bono, Johann, Makarov, Vladimir, Chan, Timothy A., Silverman, Robert H., Stark, George R., Varadan, Vinay, De Carvalho, Daniel D., Chakraborty, Abhishek A., Sharifi, Nima
Publicado 2022

Association of Peritumoral Radiomics With Tumor Biology and Pathologic Response to Preoperative Targeted Therapy for HER2 (ERBB2)–Positive Breast Cancer

por Braman, Nathaniel, Prasanna, Prateek, Whitney, Jon, Singh, Salendra, Beig, Niha, Etesami, Maryam, Bates, David D. B., Gallagher, Katherine, Bloch, B. Nicolas, Vulchi, Manasa, Turk, Paulette, Bera, Kaustav, Abraham, Jame, Sikov, William M., Somlo, George, Harris, Lyndsay N., Gilmore, Hannah, Plecha, Donna, Varadan, Vinay, Madabhushi, Anant
Publicado 2019

Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing

por Baslan, Timour, Kendall, Jude, Volyanskyy, Konstantin, McNamara, Katherine, Cox, Hilary, D'Italia, Sean, Ambrosio, Frank, Riggs, Michael, Rodgers, Linda, Leotta, Anthony, Song, Junyan, Mao, Yong, Wu, Jie, Shah, Ronak, Gularte-Mérida, Rodrigo, Chadalavada, Kalyani, Nanjangud, Gouri, Varadan, Vinay, Gordon, Assaf, Curtis, Christina, Krasnitz, Alex, Dimitrova, Nevenka, Harris, Lyndsay, Wigler, Michael, Hicks, James
Publicado 2020

ICAM1 initiates CTC cluster formation and trans-endothelial migration in lung metastasis of breast cancer

por Taftaf, Rokana, Liu, Xia, Singh, Salendra, Jia, Yuzhi, Dashzeveg, Nurmaa K., Hoffmann, Andrew D., El-Shennawy, Lamiaa, Ramos, Erika K., Adorno-Cruz, Valery, Schuster, Emma J., Scholten, David, Patel, Dhwani, Zhang, Youbin, Davis, Andrew A., Reduzzi, Carolina, Cao, Yue, D’Amico, Paolo, Shen, Yang, Cristofanilli, Massimo, Muller, William A., Varadan, Vinay, Liu, Huiping
Publicado 2021

An ErbB2/c-Src axis links bioenergetics with PRC2 translation to drive epigenetic reprogramming and mammary tumorigenesis

por Smith, Harvey W., Hirukawa, Alison, Sanguin-Gendreau, Virginie, Nandi, Ipshita, Dufour, Catherine R., Zuo, Dongmei, Tandoc, Kristofferson, Leibovitch, Matthew, Singh, Salendra, Rennhack, Jonathan P., Swiatnicki, Matthew, Lavoie, Cynthia, Papavasiliou, Vasilios, Temps, Carolin, Carragher, Neil O., Unciti-Broceta, Asier, Savage, Paul, Basik, Mark, van Hoef, Vincent, Larsson, Ola, Cooper, Caroline L., Vargas Calderon, Ana Cristina, Beith, Jane, Millar, Ewan, Selinger, Christina, Giguère, Vincent, Park, Morag, Harris, Lyndsay N., Varadan, Vinay, Andrechek, Eran R., O’Toole, Sandra A., Topisirovic, Ivan, Muller, William J.
Publicado 2019