The lingering mysteries of metastatic recurrence in breast cancer

por Riggio, Alessandra I., Varley, Katherine E., Welm, Alana L.
Publicado 2020

Spatially-resolved quantification of proteins in triple negative breast cancers reveals differences in the immune microenvironment associated with prognosis

por Stewart, Rachel L., Matynia, Anna P., Factor, Rachel E., Varley, Katherine E.
Publicado 2020

Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner

por Gertz, Jason, Reddy, Timothy E., Varley, Katherine E., Garabedian, Michael J., Myers, Richard M.
Publicado 2012

Intra-tumor heterogeneity of MLH1 promoter methylation revealed by deep single molecule bisulfite sequencing

por Varley, Katherine E., Mutch, David G., Edmonston, Tina B., Goodfellow, Paul J., Mitra, Robi D.
Publicado 2009

CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing

por Wallace, Amelia D., Sasani, Thomas A., Swanier, Jordan, Gates, Brooke L., Greenland, Jeff, Pedersen, Brent S., Varley, Katherine E., Quinlan, Aaron R.
Publicado 2021

Analysis of DNA Methylation in a Three-Generation Family Reveals Widespread Genetic Influence on Epigenetic Regulation

por Gertz, Jason, Varley, Katherine E., Reddy, Timothy E., Bowling, Kevin M., Pauli, Florencia, Parker, Stephanie L., Kucera, Katerina S., Willard, Huntington F., Myers, Richard M.
Publicado 2011

TXNIP loss expands Myc-dependent transcriptional programs by increasing Myc genomic binding

por Lim, Tian-Yeh, Wilde, Blake R., Thomas, Mallory L., Murphy, Kristin E., Vahrenkamp, Jeffery M., Conway, Megan E., Varley, Katherine E., Gertz, Jason, Ayer, Donald E.
Publicado 2023

Early de novo DNA methylation and prolonged demethylation in the muscle lineage

por Tsumagari, Koji, Baribault, Carl, Terragni, Jolyon, Varley, Katherine E., Gertz, Jason, Pradhan, Sirharsa, Badoo, Melody, Crain, Charlene M., Song, Lingyun, Crawford, Gregory E., Myers, Richard M., Lacey, Michelle, Ehrlich, Melanie
Publicado 2013

Tet2 coordinates with Foxo1 and Runx1 to balance T follicular helper cell and T helper 1 cell differentiation

por Baessler, Andrew, Novis, Camille L., Shen, Zuolian, Perovanovic, Jelena, Wadsworth, Mark, Thiede, Kendall A., Sircy, Linda M., Harrison-Chau, Malia, Nguyen, Nguyen X., Varley, Katherine E., Tantin, Dean, Hale, J. Scott
Publicado 2022

Widespread plasticity in CTCF occupancy linked to DNA methylation

por Wang, Hao, Maurano, Matthew T., Qu, Hongzhu, Varley, Katherine E., Gertz, Jason, Pauli, Florencia, Lee, Kristen, Canfield, Theresa, Weaver, Molly, Sandstrom, Richard, Thurman, Robert E., Kaul, Rajinder, Myers, Richard M., Stamatoyannopoulos, John A.
Publicado 2012

Quantification of rare allelic variants from pooled genomic DNA

por Druley, Todd E, Vallania, Francesco LM, Wegner, Daniel J, Varley, Katherine E, Knowles, Olivia L, Bonds, Jacqueline A, Robison, Sarah W, Doniger, Scott W, Hamvas, Aaron, Cole, F. Sessions, Fay, Justin C, Mitra, Robi D
Publicado 2009

IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes

por Reyes, Alejandro, Sandoval, Andrea, Cubillos-Ruiz, Andrés, Varley, Katherine E, Hernández-Neuta, Ivan, Samper, Sofía, Martín, Carlos, García, María Jesús, Ritacco, Viviana, López, Lucelly, Robledo, Jaime, Zambrano, María Mercedes, Mitra, Robi D, Del Portillo, Patricia
Publicado 2012

Recurrent read-through fusion transcripts in breast cancer

por Varley, Katherine E., Gertz, Jason, Roberts, Brian S., Davis, Nicholas S., Bowling, Kevin M., Kirby, Marie K., Nesmith, Amy S., Oliver, Patsy G., Grizzle, William E., Forero, Andres, Buchsbaum, Donald J., LoBuglio, Albert F., Myers, Richard M.
Publicado 2014

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

por Reddy, Timothy E., Gertz, Jason, Pauli, Florencia, Kucera, Katerina S., Varley, Katherine E., Newberry, Kimberly M., Marinov, Georgi K., Mortazavi, Ali, Williams, Brian A., Song, Lingyun, Crawford, Gregory E., Wold, Barbara, Willard, Huntington F., Myers, Richard M.
Publicado 2012

Dynamic DNA methylation across diverse human cell lines and tissues

por Varley, Katherine E., Gertz, Jason, Bowling, Kevin M., Parker, Stephanie L., Reddy, Timothy E., Pauli-Behn, Florencia, Cross, Marie K., Williams, Brian A., Stamatoyannopoulos, John A., Crawford, Gregory E., Absher, Devin M., Wold, Barbara J., Myers, Richard M.
Publicado 2013

A predominant enhancer co-amplified with the SOX2 oncogene is necessary and sufficient for its expression in squamous cancer

por Liu, Yanli, Wu, Zhong, Zhou, Jin, Ramadurai, Dinesh K. A., Mortenson, Katelyn L., Aguilera-Jimenez, Estrella, Yan, Yifei, Yang, Xiaojun, Taylor, Alison M., Varley, Katherine E., Gertz, Jason, Choi, Peter S., Cherniack, Andrew D., Chen, Xingdong, Bass, Adam J., Bailey, Swneke D., Zhang, Xiaoyang
Publicado 2021

Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development

por Giraddi, Rajshekhar R., Chung, Chi-Yeh, Heinz, Richard E., Balcioglu, Ozlen, Novotny, Mark, Trejo, Christy L., Dravis, Christopher, Hagos, Berhane M., Mehrabad, Elnaz Mirzaei, Rodewald, Luo Wei, Hwang, Jae Y., Fan, Cheng, Lasken, Roger, Varley, Katherine E., Perou, Charles M., Wahl, Geoffrey M., Spike, Benjamin T.
Publicado 2018

TBCRC 002: a phase II, randomized, open-label trial of preoperative letrozole with or without bevacizumab in postmenopausal women with newly diagnosed stage 2/3 hormone receptor-po...

por Vaklavas, Christos, Roberts, Brian S., Varley, Katherine E., Lin, Nancy U., Liu, Minetta C., Rugo, Hope S., Puhalla, Shannon, Nanda, Rita, Storniolo, Anna Maria, Carey, Lisa A., Saleh, Mansoor N., Li, Yufeng, Delossantos, Jennifer F., Grizzle, William E., LoBuglio, Albert F., Myers, Richard M., Forero-Torres, Andres
Publicado 2020

Genomic regulation of invasion by STAT3 in triple negative breast cancer

por McDaniel, Joy M., Varley, Katherine E., Gertz, Jason, Savic, Daniel S., Roberts, Brian S., Bailey, Sarah K., Shevde, Lalita A., Ramaker, Ryne C., Lasseigne, Brittany N., Kirby, Marie K., Newberry, Kimberly M., Christopher Partridge, E ., Jones, Angela L., Boone, Braden, Levy, Shawn E., Oliver, Patsy G., Sexton, Katherine C., Grizzle, William E., Forero, Andres, Buchsbaum, Donald J., Cooper, Sara J., Myers, Richard M.
Publicado 2016

Loss of G0/G1 switch gene 2 (G0S2) promotes disease progression and drug resistance in chronic myeloid leukaemia (CML) by disrupting glycerophospholipid metabolism

por Gonzalez, Mayra A., Olivas, Idaly M., Bencomo‐Alvarez, Alfonso E., Rubio, Andres J., Barreto‐Vargas, Christian, Lopez, Jose L., Dang, Sara K., Solecki, Jonathan P., McCall, Emily, Astudillo, Gonzalo, Velazquez, Vanessa V., Schenkel, Katherine, Reffell, Kelaiah, Perkins, Mariah, Nguyen, Nhu, Apaflo, Jehu N., Alvidrez, Efren, Young, James E., Lara, Joshua J., Yan, Dongqing, Senina, Anna, Ahmann, Jonathan, Varley, Katherine E., Mason, Clinton C., Eide, Christopher A., Druker, Brian J., Nurunnabi, Md, Padilla, Osvaldo, Bajpeyi, Sudip, Eiring, Anna M.
Publicado 2022