LinkedOmics: analyzing multi-omics data within and across 32 cancer types

por Vasaikar, Suhas V, Straub, Peter, Wang, Jing, Zhang, Bing
Publicado 2018

NeuroDNet - an open source platform for constructing and analyzing neurodegenerative disease networks

por Vasaikar, Suhas V, Padhi, Aditya K, Jayaram, Bhyravabhotla, Gomes, James
Publicado 2013

ANGDelMut – a web-based tool for predicting and analyzing functional loss mechanisms of amyotrophic lateral sclerosis-associated angiogenin mutations

por Padhi, Aditya K, Vasaikar, Suhas V, Jayaram, Bhyravabhotla, Gomes, James
Publicado 2014

Modulation of Neuronal Proteome Profile in Response to Japanese Encephalitis Virus Infection

por Sengupta, Nabonita, Ghosh, Sourish, Vasaikar, Suhas V., Gomes, James, Basu, Anirban
Publicado 2014

HSP70 mediates survival in apoptotic cells—Boolean network prediction and experimental validation

por Vasaikar, Suhas V., Ghosh, Sourish, Narain, Priyam, Basu, Anirban, Gomes, James
Publicado 2015

Mechanisms of Loss of Functions of Human Angiogenin Variants Implicated in Amyotrophic Lateral Sclerosis

por Padhi, Aditya K., Kumar, Hirdesh, Vasaikar, Suhas V., Jayaram, Bhyravabhotla, Gomes, James
Publicado 2012

EMTome: a resource for pan-cancer analysis of epithelial-mesenchymal transition genes and signatures

por Vasaikar, Suhas V., Deshmukh, Abhijeet P., den Hollander, Petra, Addanki, Sridevi, Kuburich, Nick Allen, Kudaravalli, Sriya, Joseph, Robiya, Chang, Jeffrey T., Soundararajan, Rama, Mani, Sendurai A.
Publicado 2020

Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing

por Deshmukh, Abhijeet P., Vasaikar, Suhas V., Tomczak, Katarzyna, Tripathi, Shubham, den Hollander, Petra, Arslan, Emre, Chakraborty, Priyanka, Soundararajan, Rama, Jolly, Mohit Kumar, Rai, Kunal, Levine, Herbert, Mani, Sendurai A.
Publicado 2021

A comprehensive platform for analyzing longitudinal multi-omics data

por Vasaikar, Suhas V., Savage, Adam K., Gong, Qiuyu, Swanson, Elliott, Talla, Aarthi, Lord, Cara, Heubeck, Alexander T., Reading, Julian, Graybuck, Lucas T., Meijer, Paul, Torgerson, Troy R., Skene, Peter J., Bumol, Thomas F., Li, Xiao-jun
Publicado 2023

Persistent serum protein signatures define an inflammatory subcategory of long COVID

por Talla, Aarthi, Vasaikar, Suhas V., Szeto, Gregory Lee, Lemos, Maria P., Czartoski, Julie L., MacMillan, Hugh, Moodie, Zoe, Cohen, Kristen W., Fleming, Lamar B., Thomson, Zachary, Okada, Lauren, Becker, Lynne A., Coffey, Ernest M., De Rosa, Stephen C., Newell, Evan W., Skene, Peter J., Li, Xiaojun, Bumol, Thomas F., Juliana McElrath, M., Torgerson, Troy R.
Publicado 2023

Microscaled proteogenomic methods for precision oncology

por Satpathy, Shankha, Jaehnig, Eric J., Krug, Karsten, Kim, Beom-Jun, Saltzman, Alexander B., Chan, Doug W., Holloway, Kimberly R., Anurag, Meenakshi, Huang, Chen, Singh, Purba, Gao, Ari, Namai, Noel, Dou, Yongchao, Wen, Bo, Vasaikar, Suhas V., Mutch, David, Watson, Mark A., Ma, Cynthia, Ademuyiwa, Foluso O., Rimawi, Mothaffar F., Schiff, Rachel, Hoog, Jeremy, Jacobs, Samuel, Malovannaya, Anna, Hyslop, Terry, Clauser, Karl R., Mani, D. R., Perou, Charles M., Miles, George, Zhang, Bing, Gillette, Michael A., Carr, Steven A., Ellis, Matthew J.
Publicado 2020

Trimodal single-cell profiling reveals a novel pediatric CD8αα(+) T cell subset and broad age-related molecular reprogramming across the T cell compartment

por Thomson, Zachary, He, Ziyuan, Swanson, Elliott, Henderson, Katherine, Phalen, Cole, Zaim, Samir Rachid, Pebworth, Mark-Phillip, Okada, Lauren Y., Heubeck, Alexander T., Roll, Charles R., Hernandez, Veronica, Weiss, Morgan, Genge, Palak C., Reading, Julian, Giles, Josephine R., Manne, Sasikanth, Dougherty, Jeanette, Jasen, C. J., Greenplate, Allison R., Becker, Lynne A., Graybuck, Lucas T., Vasaikar, Suhas V., Szeto, Gregory L., Savage, Adam K., Speake, Cate, Buckner, Jane H., Li, Xiao-jun, Bumol, Thomas F., Wherry, E.John, Torgerson, Troy R., Vella, Laura A., Henrickson, Sarah E., Skene, Peter J., Gustafson, Claire E.
Publicado 2023