Data sharing for clinical utility

por Bjork, Isabel, Peralez, Jennifer, Haussler, David, Spunt, Sheri L., Vaske, Olena Morozova
Publicado 2019

Erratum: Data sharing for clinical utility

por Bjork, Isabel, Peralez, Jennifer, Haussler, David, Spunt, Sheri L., Morozova Vaske, Olena
Publicado 2019

317 Omics based analysis to identify novel markers of TMZ response in Glioblastoma Multiforme

por Reed, Megan R., De Loose, Annick, Guzman, Grace, Lyle, A. Geoffrey, Learned, Katrina, Vaske, Olena M., Rodriguez, Analiz
Publicado 2023

323 Generation of a functional precision medicine pipeline which combines comparative transcriptomics and tumor organoid modeling to identify bespoke treatment strategies for gliob...

por Reed, Megan R., Lyle, A. Geoffrey, De Loose, Annick, Learned, Katrina, Vibat, Cecile Rose T., Wardell, Christopher P., Eoff, Robert L., Vaske, Olena M., Rodriguez, Analiz
Publicado 2022

Barriers to accessing public cancer genomic data

por Learned, Katrina, Durbin, Ann, Currie, Robert, Kephart, Ellen Towle, Beale, Holly C., Sanders, Lauren M., Pfeil, Jacob, Goldstein, Theodore C., Salama, Sofie R., Haussler, David, Vaske, Olena Morozova, Bjork, Isabel M.
Publicado 2019

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma

por Sanders, Lauren M, Cheney, Allison, Seninge, Lucas, van den Bout, Anouk, Chen, Marissa, Beale, Holly C, Kephart, Ellen Towle, Pfeil, Jacob, Learned, Katrina, Lyle, A Geoffrey, Bjork, Isabel, Haussler, David, Salama, Sofie R, Vaske, Olena M
Publicado 2020

Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors

por Sanders, Lauren M., Chandra, Rahul, Zebarjadi, Navid, Beale, Holly C., Lyle, A. Geoffrey, Rodriguez, Analiz, Kephart, Ellen Towle, Pfeil, Jacob, Cheney, Allison, Learned, Katrina, Currie, Rob, Gitlin, Leonid, Vengerov, David, Haussler, David, Salama, Sofie R., Vaske, Olena M.
Publicado 2022

BIOL-20. BIOPROCESSING OF SURGICAL PEDIATRIC BRAIN TUMOR SPECIMENS FOR GENOME-GUIDED PERSONALIZED DRUG TESTING

por Nasajpour, Emon, Tran, Caitlynn, Garcia, Cesar, Lyle, Geoff, Guinle, Maria I Barros, Bagley, Bryce A, Lancero, Hope, Gibson, Eden E, Schouten, Troy, Mahaney, Kelly, Vogel, Hannes, Learned, Katrina, Vaske, Olena, Grant, Gerald A, Prolo, Laura M, Petritsch, Claudia K
Publicado 2023

Metastatic pediatric sclerosing epithelioid fibrosarcoma

por Woods, Andrew D., Purohit, Reshma, Mitchell, Laura Crocker, Collier, John R., Collier, Katherine A., Lathara, Melvin, Learned, Katrina, Vaske, Olena, Geiger, Heather, Wrzeszczynski, Kazimierz O., Jobanputra, Vaidehi, Srinivasa, Ganapati, Rudzinski, Erin R., Whelan, Kimberly, Beierle, Elizabeth, Spunt, Sheri L., Keller, Charles, Wadhwa, Aman
Publicado 2021

The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

por Beale, Holly C, Roger, Jacquelyn M, Cattle, Matthew A, McKay, Liam T, Thompson, Drew K A, Learned, Katrina, Lyle, A Geoffrey, Kephart, Ellen T, Currie, Rob, Lam, Du Linh, Sanders, Lauren, Pfeil, Jacob, Vivian, John, Bjork, Isabel, Salama, Sofie R, Haussler, David, Vaske, Olena M
Publicado 2021

Hydra: A mixture modeling framework for subtyping pediatric cancer cohorts using multimodal gene expression signatures

por Pfeil, Jacob, Sanders, Lauren M., Anastopoulos, Ioannis, Lyle, A. Geoffrey, Weinstein, Alana S., Xue, Yuanqing, Blair, Andrew, Beale, Holly C., Lee, Alex, Leung, Stanley G., Dinh, Phuong T., Shah, Avanthi Tayi, Breese, Marcus R., Devine, W. Patrick, Bjork, Isabel, Salama, Sofie R., Sweet-Cordero, E. Alejandro, Haussler, David, Vaske, Olena Morozova
Publicado 2020

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

por Thornlow, Bryan, Hinrichs, Angie S., Jain, Miten, Dhillon, Namrita, La, Scott, Kapp, Joshua D., Anigbogu, Ikenna, Cassatt-Johnstone, Molly, McBroome, Jakob, Haeussler, Maximilian, Turakhia, Yatish, Chang, Terren, Olsen, Hugh E, Sanford, Jeremy, Stone, Michael, Vaske, Olena, Bjork, Isabel, Akeson, Mark, Shapiro, Beth, Haussler, David, Kilpatrick, A. Marm, Corbett-Detig, Russell
Publicado 2021

A Functional Precision Medicine Pipeline Combines Comparative Transcriptomics and Tumor Organoid Modeling to Identify Bespoke Treatment Strategies for Glioblastoma

por Reed, Megan R., Lyle, A. Geoffrey, De Loose, Annick, Maddukuri, Leena, Learned, Katrina, Beale, Holly C., Kephart, Ellen T., Cheney, Allison, van den Bout, Anouk, Lee, Madison P., Hundley, Kelsey N., Smith, Ashley M., DesRochers, Teresa M., Vibat, Cecile Rose T., Gokden, Murat, Salama, Sofie, Wardell, Christopher P., Eoff, Robert L., Vaske, Olena M., Rodriguez, Analiz
Publicado 2021

A method for campus-wide SARS-CoV-2 surveillance at a large public university

por Chang, Terren, Draper, Jolene M., Van den Bout, Anouk, Kephart, Ellen, Maul-Newby, Hannah, Vasquez, Yvonne, Woodbury, Jason, Randi, Savanna, Pedersen, Martina, Nave, Maeve, La, Scott, Gallagher, Natalie, McCabe, Molly M., Dhillon, Namrita, Bjork, Isabel, Luttrell, Michael, Dang, Frank, MacMillan, John B., Green, Ralph, Miller, Elizabeth, Kilpatrick, Auston M., Vaske, Olena, Stone, Michael D., Sanford, Jeremy R.
Publicado 2021

Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor

por Sanders, Lauren M., Rangaswami, Arun, Bjork, Isabel, Lam, Du Linh, Beale, Holly C., Kephart, Ellen Towle, Durbin, Ann, Learned, Katrina, Currie, Rob, Lyle, A. Geoffrey, Pfeil, Jacob, Shah, Avanthi Tayi, Lee, Alex G., Leung, Stanley G., Behroozfard, Inge H., Breese, Marcus R., Peralez, Jennifer, Hazard, Florette K., Lacayo, Norman, Spunt, Sheri L., Haussler, David, Salama, Sofie R., Sweet-Cordero, E. Alejandro, Vaske, Olena M.
Publicado 2019

Cancer Informatics for Cancer Centers: Scientific Drivers for Informatics, Data Science, and Care in Pediatric, Adolescent, and Young Adult Cancer

por Kerlavage, Anthony R., Kirchhoff, Anne C., Guidry Auvil, Jaime M., Sharpless, Norman E., Davis, Kara L., Reilly, Karlyne, Reaman, Gregory, Penberthy, Lynne, Deapen, Dennis, Hwang, Amie, Durbin, Eric B., Gallotto, Sara L., Aplenc, Richard, Volchenboum, Samuel L., Heath, Allison P., Aronow, Bruce J., Zhang, Jinghui, Vaske, Olena, Alonzo, Todd A., Nathan, Paul C., Poynter, Jenny N., Armstrong, Greg, Hahn, Erin E., Wernli, Karen J., Greene, Casey, DiGiovanna, Jack, Resnick, Adam C., Shalley, Eve R., Nadaf, Sorena, Kibbe, Warren A.
Publicado 2021

Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer

por Vaske, Olena M., Bjork, Isabel, Salama, Sofie R., Beale, Holly, Tayi Shah, Avanthi, Sanders, Lauren, Pfeil, Jacob, Lam, Du L., Learned, Katrina, Durbin, Ann, Kephart, Ellen T., Currie, Rob, Newton, Yulia, Swatloski, Teresa, McColl, Duncan, Vivian, John, Zhu, Jingchun, Lee, Alex G., Leung, Stanley G., Spillinger, Aviv, Liu, Heng-Yi, Liang, Winnie S., Byron, Sara A., Berens, Michael E., Resnick, Adam C., Lacayo, Norman, Spunt, Sheri L., Rangaswami, Arun, Huynh, Van, Torno, Lilibeth, Plant, Ashley, Kirov, Ivan, Zabokrtsky, Keri B., Rassekh, S. Rod, Deyell, Rebecca J., Laskin, Janessa, Marra, Marco A., Sender, Leonard S., Mueller, Sabine, Sweet-Cordero, E. Alejandro, Goldstein, Theodore C., Haussler, David
Publicado 2019

Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design

por Rokita, Jo Lynne, Rathi, Komal S., Cardenas, Maria F., Upton, Kristen A., Jayaseelan, Joy, Cross, Katherine L., Pfeil, Jacob, Egolf, Laura E., Way, Gregory P., Farrel, Alvin, Kendsersky, Nathan M., Patel, Khushbu, Gaonkar, Krutika S., Modi, Apexa, Berko, Esther R., Lopez, Gonzalo, Vaksman, Zalman, Mayoh, Chelsea, Nance, Jonas, McCoy, Kristyn, Haber, Michelle, Evans, Kathryn, McCalmont, Hannah, Bendak, Katerina, Böhm, Julia W., Marshall, Glenn M., Tyrrell, Vanessa, Kalletla, Karthik, Braun, Frank K., Qi, Lin, Du, Yunchen, Zhang, Huiyuan, Lindsay, Holly B., Zhao, Sibo, Shu, Jack, Baxter, Patricia, Morton, Christopher, Kurmashev, Dias, Zheng, Siyuan, Chen, Yidong, Bowen, Jay, Bryan, Anthony C., Leraas, Kristen M., Coppens, Sara E., Doddapaneni, HarshaVardhan, Momin, Zeineen, Zhang, Wendong, Sacks, Gregory I., Hart, Lori S., Krytska, Kateryna, Mosse, Yael P., Gatto, Gregory J., Sanchez, Yolanda, Greene, Casey S., Diskin, Sharon J., Vaske, Olena Morozova, Haussler, David, Gastier-Foster, Julie M., E. Anders, Kolb, Gorlick, Richard, Li, Xiao-Nan, Reynolds, C. Patrick, Kurmasheva, Raushan T., Houghton, Peter J., Smith, Malcolm A., Lock, Richard B., Raman, Pichai, Wheeler, David A., Maris, John M.
Publicado 2019

The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science

por Lilly, Jena V., Rokita, Jo Lynne, Mason, Jennifer L., Patton, Tatiana, Stefankiewiz, Stephanie, Higgins, David, Trooskin, Gerri, Larouci, Carina A., Arya, Kamnaa, Appert, Elizabeth, Heath, Allison P., Zhu, Yuankun, Brown, Miguel A., Zhang, Bo, Farrow, Bailey K., Robins, Shannon, Morgan, Allison M., Nguyen, Thinh Q., Frenkel, Elizabeth, Lehmann, Kaitlin, Drake, Emily, Sullivan, Catherine, Plisiewicz, Alexa, Coleman, Noel, Patterson, Luke, Koptyra, Mateusz, Helili, Zeinab, Van Kuren, Nicholas, Young, Nathan, Kim, Meen Chul, Friedman, Christopher, Lubneuski, Alex, Blackden, Christopher, Williams, Marti, Baubet, Valerie, Tauhid, Lamiya, Galanaugh, Jamie, Boucher, Katie, Ijaz, Heba, Cole, Kristina A., Choudhari, Namrata, Santi, Mariarita, Moulder, Robert W., Waller, Jonathan, Rife, Whitney, Diskin, Sharon J., Mateos, Marion, Parsons, Donald W., Pollack, Ian F., Goldman, Stewart, Leary, Sarah, Caporalini, Chiara, Buccoliero, Anna Maria, Scagnet, Mirko, Haussler, David, Hanson, Derek, Firestein, Ron, Cain, Jason, Phillips, Joanna J., Gupta, Nalin, Mueller, Sabine, Grant, Gerald, Monje-Deisseroth, Michelle, Partap, Sonia, Greenfield, Jeffrey P., Hashizume, Rintaro, Smith, Amy, Zhu, Shida, Johnston, James M., Fangusaro, Jason R., Miller, Matthew, Wood, Matthew D., Gardner, Sharon, Carter, Claire L., Prolo, Laura M., Pisapia, Jared, Pehlivan, Katherine, Franson, Andrea, Niazi, Toba, Rubin, Josh, Abdelbaki, Mohamed, Ziegler, David S., Lindsay, Holly B., Stucklin, Ana Guerreiro, Gerber, Nicolas, Vaske, Olena M., Quinsey, Carolyn, Rood, Brian R., Nazarian, Javad, Raabe, Eric, Jackson, Eric M., Stapleton, Stacie, Lober, Robert M., Kram, David E., Koschmann, Carl, Storm, Phillip B., Lulla, Rishi R., Prados, Michael, Resnick, Adam C., Waanders, Angela J.
Publicado 2022