317 Omics based analysis to identify novel markers of TMZ response in Glioblastoma Multiforme

por Reed, Megan R., De Loose, Annick, Guzman, Grace, Lyle, A. Geoffrey, Learned, Katrina, Vaske, Olena M., Rodriguez, Analiz
Publicado 2023

323 Generation of a functional precision medicine pipeline which combines comparative transcriptomics and tumor organoid modeling to identify bespoke treatment strategies for gliob...

por Reed, Megan R., Lyle, A. Geoffrey, De Loose, Annick, Learned, Katrina, Vibat, Cecile Rose T., Wardell, Christopher P., Eoff, Robert L., Vaske, Olena M., Rodriguez, Analiz
Publicado 2022

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma

por Sanders, Lauren M, Cheney, Allison, Seninge, Lucas, van den Bout, Anouk, Chen, Marissa, Beale, Holly C, Kephart, Ellen Towle, Pfeil, Jacob, Learned, Katrina, Lyle, A Geoffrey, Bjork, Isabel, Haussler, David, Salama, Sofie R, Vaske, Olena M
Publicado 2020

Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors

por Sanders, Lauren M., Chandra, Rahul, Zebarjadi, Navid, Beale, Holly C., Lyle, A. Geoffrey, Rodriguez, Analiz, Kephart, Ellen Towle, Pfeil, Jacob, Cheney, Allison, Learned, Katrina, Currie, Rob, Gitlin, Leonid, Vengerov, David, Haussler, David, Salama, Sofie R., Vaske, Olena M.
Publicado 2022

The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets

por Beale, Holly C, Roger, Jacquelyn M, Cattle, Matthew A, McKay, Liam T, Thompson, Drew K A, Learned, Katrina, Lyle, A Geoffrey, Kephart, Ellen T, Currie, Rob, Lam, Du Linh, Sanders, Lauren, Pfeil, Jacob, Vivian, John, Bjork, Isabel, Salama, Sofie R, Haussler, David, Vaske, Olena M
Publicado 2021

A Functional Precision Medicine Pipeline Combines Comparative Transcriptomics and Tumor Organoid Modeling to Identify Bespoke Treatment Strategies for Glioblastoma

por Reed, Megan R., Lyle, A. Geoffrey, De Loose, Annick, Maddukuri, Leena, Learned, Katrina, Beale, Holly C., Kephart, Ellen T., Cheney, Allison, van den Bout, Anouk, Lee, Madison P., Hundley, Kelsey N., Smith, Ashley M., DesRochers, Teresa M., Vibat, Cecile Rose T., Gokden, Murat, Salama, Sofie, Wardell, Christopher P., Eoff, Robert L., Vaske, Olena M., Rodriguez, Analiz
Publicado 2021

Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor

por Sanders, Lauren M., Rangaswami, Arun, Bjork, Isabel, Lam, Du Linh, Beale, Holly C., Kephart, Ellen Towle, Durbin, Ann, Learned, Katrina, Currie, Rob, Lyle, A. Geoffrey, Pfeil, Jacob, Shah, Avanthi Tayi, Lee, Alex G., Leung, Stanley G., Behroozfard, Inge H., Breese, Marcus R., Peralez, Jennifer, Hazard, Florette K., Lacayo, Norman, Spunt, Sheri L., Haussler, David, Salama, Sofie R., Sweet-Cordero, E. Alejandro, Vaske, Olena M.
Publicado 2019

Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer

por Vaske, Olena M., Bjork, Isabel, Salama, Sofie R., Beale, Holly, Tayi Shah, Avanthi, Sanders, Lauren, Pfeil, Jacob, Lam, Du L., Learned, Katrina, Durbin, Ann, Kephart, Ellen T., Currie, Rob, Newton, Yulia, Swatloski, Teresa, McColl, Duncan, Vivian, John, Zhu, Jingchun, Lee, Alex G., Leung, Stanley G., Spillinger, Aviv, Liu, Heng-Yi, Liang, Winnie S., Byron, Sara A., Berens, Michael E., Resnick, Adam C., Lacayo, Norman, Spunt, Sheri L., Rangaswami, Arun, Huynh, Van, Torno, Lilibeth, Plant, Ashley, Kirov, Ivan, Zabokrtsky, Keri B., Rassekh, S. Rod, Deyell, Rebecca J., Laskin, Janessa, Marra, Marco A., Sender, Leonard S., Mueller, Sabine, Sweet-Cordero, E. Alejandro, Goldstein, Theodore C., Haussler, David
Publicado 2019

The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science

por Lilly, Jena V., Rokita, Jo Lynne, Mason, Jennifer L., Patton, Tatiana, Stefankiewiz, Stephanie, Higgins, David, Trooskin, Gerri, Larouci, Carina A., Arya, Kamnaa, Appert, Elizabeth, Heath, Allison P., Zhu, Yuankun, Brown, Miguel A., Zhang, Bo, Farrow, Bailey K., Robins, Shannon, Morgan, Allison M., Nguyen, Thinh Q., Frenkel, Elizabeth, Lehmann, Kaitlin, Drake, Emily, Sullivan, Catherine, Plisiewicz, Alexa, Coleman, Noel, Patterson, Luke, Koptyra, Mateusz, Helili, Zeinab, Van Kuren, Nicholas, Young, Nathan, Kim, Meen Chul, Friedman, Christopher, Lubneuski, Alex, Blackden, Christopher, Williams, Marti, Baubet, Valerie, Tauhid, Lamiya, Galanaugh, Jamie, Boucher, Katie, Ijaz, Heba, Cole, Kristina A., Choudhari, Namrata, Santi, Mariarita, Moulder, Robert W., Waller, Jonathan, Rife, Whitney, Diskin, Sharon J., Mateos, Marion, Parsons, Donald W., Pollack, Ian F., Goldman, Stewart, Leary, Sarah, Caporalini, Chiara, Buccoliero, Anna Maria, Scagnet, Mirko, Haussler, David, Hanson, Derek, Firestein, Ron, Cain, Jason, Phillips, Joanna J., Gupta, Nalin, Mueller, Sabine, Grant, Gerald, Monje-Deisseroth, Michelle, Partap, Sonia, Greenfield, Jeffrey P., Hashizume, Rintaro, Smith, Amy, Zhu, Shida, Johnston, James M., Fangusaro, Jason R., Miller, Matthew, Wood, Matthew D., Gardner, Sharon, Carter, Claire L., Prolo, Laura M., Pisapia, Jared, Pehlivan, Katherine, Franson, Andrea, Niazi, Toba, Rubin, Josh, Abdelbaki, Mohamed, Ziegler, David S., Lindsay, Holly B., Stucklin, Ana Guerreiro, Gerber, Nicolas, Vaske, Olena M., Quinsey, Carolyn, Rood, Brian R., Nazarian, Javad, Raabe, Eric, Jackson, Eric M., Stapleton, Stacie, Lober, Robert M., Kram, David E., Koschmann, Carl, Storm, Phillip B., Lulla, Rishi R., Prados, Michael, Resnick, Adam C., Waanders, Angela J.
Publicado 2022