A hybrid computational strategy to address WGS variant analysis in >5000 samples

por Huang, Zhuoyi, Rustagi, Navin, Veeraraghavan, Narayanan, Carroll, Andrew, Gibbs, Richard, Boerwinkle, Eric, Venkata, Manjunath Gorentla, Yu, Fuli
Publicado 2016

ChloroplastDB: the Chloroplast Genome Database

por Cui, Liying, Veeraraghavan, Narayanan, Richter, Alexander, Wall, Kerr, Jansen, Robert K., Leebens-Mack, Jim, Makalowska, Izabela, dePamphilis, Claude W.
Publicado 2006

The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus Found in the Amblyomma americanum Tick

por Swei, Andrea, Russell, Brandy J., Naccache, Samia N., Kabre, Beniwende, Veeraraghavan, Narayanan, Pilgard, Mark A., Johnson, Barbara J. B., Chiu, Charles Y.
Publicado 2013

Partially automated whole-genome sequencing reanalysis of previously undiagnosed pediatric patients can efficiently yield new diagnoses

por James, Kiely N., Clark, Michelle M., Camp, Brandon, Kint, Cyrielle, Schols, Peter, Batalov, Sergey, Briggs, Benjamin, Veeraraghavan, Narayanan, Chowdhury, Shimul, Kingsmore, Stephen F.
Publicado 2020

Rapid whole genome sequencing impacts care and resource utilization in infants with congenital heart disease

por Sweeney, Nathaly M., Nahas, Shareef A., Chowdhury, Shimul, Batalov, Sergey, Clark, Michelle, Caylor, Sara, Cakici, Julie, Nigro, John J., Ding, Yan, Veeraraghavan, Narayanan, Hobbs, Charlotte, Dimmock, David, Kingsmore, Stephen F.
Publicado 2021

Publisher Correction: Rapid whole genome sequencing impacts care and resource utilization in infants with congenital heart disease

por Sweeney, Nathaly M., Nahas, Shareef A., Chowdhury, Shimul, Batalov, Sergey, Clark, Michelle, Caylor, Sara, Cakici, Julie, Nigro, John J., Ding, Yan, Veeraraghavan, Narayanan, Hobbs, Charlotte, Dimmock, David, Kingsmore, Stephen F.
Publicado 2021

Author Correction: Rapid whole genome sequencing impacts care and resource utilization in infants with congenital heart disease

por Sweeney, Nathaly M., Nahas, Shareef A., Chowdhury, Shimul, Batalov, Sergey, Clark, Michelle, Caylor, Sara, Cakici, Julie, Nigro, John J., Ding, Yan, Veeraraghavan, Narayanan, Hobbs, Charlotte, Dimmock, David, Kingsmore, Stephen F.
Publicado 2021

Whole-exome sequencing reveals an inherited R566X mutation of the epithelial sodium channel β-subunit in a case of early-onset phenotype of Liddle syndrome

por Polfus, Linda M., Boerwinkle, Eric, Gibbs, Richard A., Metcalf, Ginger, Muzny, Donna, Veeraraghavan, Narayanan, Grove, Megan, Shete, Sanjay, Wallace, Stephanie, Milewicz, Dianna, Hanchard, Neil, Lupski, James R., Hashmi, Syed Shahrukh, Gupta-Malhotra, Monesha
Publicado 2016

Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

por Reid, Jeffrey G, Carroll, Andrew, Veeraraghavan, Narayanan, Dahdouli, Mahmoud, Sundquist, Andreas, English, Adam, Bainbridge, Matthew, White, Simon, Salerno, William, Buhay, Christian, Yu, Fuli, Muzny, Donna, Daly, Richard, Duyk, Geoff, Gibbs, Richard A, Boerwinkle, Eric
Publicado 2014

Whole genome sequencing of an African American family highlights toll like receptor 6 variants in Kawasaki disease susceptibility

por Kim, Jihoon, Shimizu, Chisato, Kingsmore, Stephen F., Veeraraghavan, Narayanan, Levy, Eric, Ribeiro dos Santos, Andre M., Yang, Hai, Flatley, Jay, Hoang, Long Truong, Hibberd, Martin L., Tremoulet, Adriana H., Harismendy, Olivier, Ohno-Machado, Lucila, Burns, Jane C.
Publicado 2017

Rapid whole-genome sequencing decreases infant morbidity and cost of hospitalization

por Farnaes, Lauge, Hildreth, Amber, Sweeney, Nathaly M., Clark, Michelle M., Chowdhury, Shimul, Nahas, Shareef, Cakici, Julie A., Benson, Wendy, Kaplan, Robert H., Kronick, Richard, Bainbridge, Matthew N., Friedman, Jennifer, Gold, Jeffrey J., Ding, Yan, Veeraraghavan, Narayanan, Dimmock, David, Kingsmore, Stephen F.
Publicado 2018

Scalable, high quality, whole genome sequencing from archived, newborn, dried blood spots

por Ding, Yan, Owen, Mallory, Le, Jennie, Batalov, Sergey, Chau, Kevin, Kwon, Yong Hyun, Van Der Kraan, Lucita, Bezares-Orin, Zaira, Zhu, Zhanyang, Veeraraghavan, Narayanan, Nahas, Shareef, Bainbridge, Matthew, Gleeson, Joe, Baer, Rebecca J., Bandoli, Gretchen, Chambers, Christina, Kingsmore, Stephen F.
Publicado 2023

The NSIGHT1-randomized controlled trial: rapid whole-genome sequencing for accelerated etiologic diagnosis in critically ill infants

por Petrikin, Josh E., Cakici, Julie A., Clark, Michelle M., Willig, Laurel K., Sweeney, Nathaly M., Farrow, Emily G., Saunders, Carol J., Thiffault, Isabelle, Miller, Neil A., Zellmer, Lee, Herd, Suzanne M., Holmes, Anne M., Batalov, Serge, Veeraraghavan, Narayanan, Smith, Laurie D., Dimmock, David P., Leeder, J. Steven, Kingsmore, Stephen F.
Publicado 2018

A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa

por Grard, Gilda, Fair, Joseph N., Lee, Deanna, Slikas, Elizabeth, Steffen, Imke, Muyembe, Jean-Jacques, Sittler, Taylor, Veeraraghavan, Narayanan, Ruby, J. Graham, Wang, Chunlin, Makuwa, Maria, Mulembakani, Prime, Tesh, Robert B., Mazet, Jonna, Rimoin, Anne W., Taylor, Travis, Schneider, Bradley S., Simmons, Graham, Delwart, Eric, Wolfe, Nathan D., Chiu, Charles Y., Leroy, Eric M.
Publicado 2012

Correction: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa

por Grard, Gilda, Fair, Joseph N., Lee, Deanna, Slikas, Elizabeth, Steffen, Imke, Muyembe, Jean-Jacques, Sittler, Taylor, Veeraraghavan, Narayanan, Ruby, J. Graham, Wang, Chunlin, Makuwa, Maria, Mulembakani, Prime, Tesh, Robert B., Mazet, Jonna, Rimoin, Anne W., Taylor, Travis, Schneider, Bradley S., Simmons, Graham, Delwart, Eric, Wolfe, Nathan D., Chiu, Charles Y., Leroy, Eric M.
Publicado 2016

Correction: Correction: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa

por Grard, Gilda, Fair, Joseph N., Lee, Deanna, Slikas, Elizabeth, Steffen, Imke, Muyembe, Jean-Jacques, Sittler, Taylor, Veeraraghavan, Narayanan, Ruby, J. Graham, Wang, Chunlin, Makuwa, Maria, Mulembakani, Prime, Tesh, Robert B., Mazet, Jonna, Rimoin, Anne W., Taylor, Travis, Schneider, Bradley S., Simmons, Graham, Delwart, Eric, Wolfe, Nathan D., Chiu, Charles Y., Leroy, Eric M.
Publicado 2017

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

por Naccache, Samia N., Federman, Scot, Veeraraghavan, Narayanan, Zaharia, Matei, Lee, Deanna, Samayoa, Erik, Bouquet, Jerome, Greninger, Alexander L., Luk, Ka-Cheung, Enge, Barryett, Wadford, Debra A., Messenger, Sharon L., Genrich, Gillian L., Pellegrino, Kristen, Grard, Gilda, Leroy, Eric, Schneider, Bradley S., Fair, Joseph N., Martínez, Miguel A., Isa, Pavel, Crump, John A., DeRisi, Joseph L., Sittler, Taylor, Hackett, John, Miller, Steve, Chiu, Charles Y.
Publicado 2014

Artificial intelligence enables comprehensive genome interpretation and nomination of candidate diagnoses for rare genetic diseases

por De La Vega, Francisco M., Chowdhury, Shimul, Moore, Barry, Frise, Erwin, McCarthy, Jeanette, Hernandez, Edgar Javier, Wong, Terence, James, Kiely, Guidugli, Lucia, Agrawal, Pankaj B., Genetti, Casie A., Brownstein, Catherine A., Beggs, Alan H., Löscher, Britt-Sabina, Franke, Andre, Boone, Braden, Levy, Shawn E., Õunap, Katrin, Pajusalu, Sander, Huentelman, Matt, Ramsey, Keri, Naymik, Marcus, Narayanan, Vinodh, Veeraraghavan, Narayanan, Billings, Paul, Reese, Martin G., Yandell, Mark, Kingsmore, Stephen F.
Publicado 2021

Assessing structural variation in a personal genome—towards a human reference diploid genome

por English, Adam C, Salerno, William J, Hampton, Oliver A, Gonzaga-Jauregui, Claudia, Ambreth, Shruthi, Ritter, Deborah I, Beck, Christine R, Davis, Caleb F, Dahdouli, Mahmoud, Ma, Singer, Carroll, Andrew, Veeraraghavan, Narayanan, Bruestle, Jeremy, Drees, Becky, Hastie, Alex, Lam, Ernest T, White, Simon, Mishra, Pamela, Wang, Min, Han, Yi, Zhang, Feng, Stankiewicz, Pawel, Wheeler, David A, Reid, Jeffrey G, Muzny, Donna M, Rogers, Jeffrey, Sabo, Aniko, Worley, Kim C, Lupski, James R, Boerwinkle, Eric, Gibbs, Richard A
Publicado 2015

A genome sequencing system for universal newborn screening, diagnosis, and precision medicine for severe genetic diseases

por Kingsmore, Stephen F., Smith, Laurie D., Kunard, Chris M., Bainbridge, Matthew, Batalov, Sergey, Benson, Wendy, Blincow, Eric, Caylor, Sara, Chambers, Christina, Del Angel, Guillermo, Dimmock, David P., Ding, Yan, Ellsworth, Katarzyna, Feigenbaum, Annette, Frise, Erwin, Green, Robert C., Guidugli, Lucia, Hall, Kevin P., Hansen, Christian, Hobbs, Charlotte A., Kahn, Scott D., Kiel, Mark, Van Der Kraan, Lucita, Krilow, Chad, Kwon, Yong H., Madhavrao, Lakshminarasimha, Le, Jennie, Lefebvre, Sebastien, Mardach, Rebecca, Mowrey, William R., Oh, Danny, Owen, Mallory J., Powley, George, Scharer, Gunter, Shelnutt, Seth, Tokita, Mari, Mehtalia, Shyamal S., Oriol, Albert, Papadopoulos, Stavros, Perry, James, Rosales, Edwin, Sanford, Erica, Schwartz, Steve, Tran, Duke, Reese, Martin G., Wright, Meredith, Veeraraghavan, Narayanan, Wigby, Kristen, Willis, Mary J., Wolen, Aaron R., Defay., Thomas
Publicado 2022