The Protein Data Bank in Europe (PDBe): bringing structure to biology

por Velankar, Sameer, Kleywegt, Gerard J.
Publicado 2011

Whither structural biologists?

por Kleywegt, Gerard J., Velankar, Sameer
Publicado 2022

Implementing an X-ray validation pipeline for the Protein Data Bank

por Gore, Swanand, Velankar, Sameer, Kleywegt, Gerard J.
Publicado 2012

Structural biology data archiving – where we are and what lies ahead

por Kleywegt, Gerard J., Velankar, Sameer, Patwardhan, Ardan
Publicado 2018

Unified access to up-to-date residue-level annotations from UniProtKB and other biological databases for PDB data

por Choudhary, Preeti, Anyango, Stephen, Berrisford, John, Tolchard, James, Varadi, Mihaly, Velankar, Sameer
Publicado 2023

Announcing the launch of Protein Data Bank China as an Associate Member of the Worldwide Protein Data Bank Partnership

por Xu, Wenqing, Velankar, Sameer, Patwardhan, Ardan, Hoch, Jeffrey C., Burley, Stephen K., Kurisu, Genji
Publicado 2023

The role of structural bioinformatics resources in the era of integrative structural biology

por Gutmanas, Aleksandras, Oldfield, Thomas J., Patwardhan, Ardan, Sen, Sanchayita, Velankar, Sameer, Kleywegt, Gerard J.
Publicado 2013

Finding enzyme cofactors in Protein Data Bank

por Mukhopadhyay, Abhik, Borkakoti, Neera, Pravda, Lukáš, Tyzack, Jonathan D, Thornton, Janet M, Velankar, Sameer
Publicado 2019

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs

por Sen, Neeladri, Anishchenko, Ivan, Bordin, Nicola, Sillitoe, Ian, Velankar, Sameer, Baker, David, Orengo, Christine
Publicado 2022

BinaryCIF and CIFTools—Lightweight, efficient and extensible macromolecular data management

por Sehnal, David, Bittrich, Sebastian, Velankar, Sameer, Koča, Jaroslav, Svobodová, Radka, Burley, Stephen K., Rose, Alexander S.
Publicado 2020

High-performance macromolecular data delivery and visualization for the web

por Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav
Publicado 2020

High-performance macromolecular data delivery and visualization for the web. Corrigendum

por Sehnal, David, Svobodová, Radka, Berka, Karel, Rose, Alexander S., Burley, Stephen K., Velankar, Sameer, Koča, Jaroslav
Publicado 2021

Validation of ligands in macromolecular structures determined by X-ray crystallography

por Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer
Publicado 2018

Worldwide Protein Data Bank validation information: usage and trends

por Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer
Publicado 2018

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins

por Dana, Jose M, Gutmanas, Aleksandras, Tyagi, Nidhi, Qi, Guoying, O’Donovan, Claire, Martin, Maria, Velankar, Sameer
Publicado 2019

PDBeCIF: an open-source mmCIF/CIF parsing and processing package

por van Ginkel, Glen, Pravda, Lukáš, Dana, José M., Varadi, Mihaly, Keller, Peter, Anyango, Stephen, Velankar, Sameer
Publicado 2021

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies

por Waman, Vaishali P, Sen, Neeladri, Varadi, Mihaly, Daina, Antoine, Wodak, Shoshana J, Zoete, Vincent, Velankar, Sameer, Orengo, Christine
Publicado 2020

New restraints and validation approaches for nucleic acid structures in PDB-REDO

por de Vries, Ida, Kwakman, Tim, Lu, Xiang-Jun, Hekkelman, Maarten L., Deshpande, Mandar, Velankar, Sameer, Perrakis, Anastassis, Joosten, Robbie P.
Publicado 2021

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data

por Nair, Sreenath, Váradi, Mihály, Nadzirin, Nurul, Pravda, Lukáš, Anyango, Stephen, Mir, Saqib, Berrisford, John, Armstrong, David, Gutmanas, Aleksandras, Velankar, Sameer
Publicado 2021

PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank

por Kunnakkattu, Ibrahim Roshan, Choudhary, Preeti, Pravda, Lukas, Nadzirin, Nurul, Smart, Oliver S., Yuan, Qi, Anyango, Stephen, Nair, Sreenath, Varadi, Mihaly, Velankar, Sameer
Publicado 2023