Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics

por Hromada, Susan, Venturelli, Ophelia S.
Publicado 2023

The Impact of Different Sources of Fluctuations on Mutual Information in Biochemical Networks

por Chevalier, Michael, Venturelli, Ophelia, El-Samad, Hana
Publicado 2015

Scalable nonlinear programming framework for parameter estimation in dynamic biological system models

por Shin, Sungho, Venturelli, Ophelia S., Zavala, Victor M.
Publicado 2019

Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions

por Thompson, Jaron C., Zavala, Victor M., Venturelli, Ophelia S.
Publicado 2023

Population Diversification in a Yeast Metabolic Program Promotes Anticipation of Environmental Shifts

por Venturelli, Ophelia S., Zuleta, Ignacio, Murray, Richard M., El-Samad, Hana
Publicado 2015

Single-cell analysis of multiple invertible promoters reveals differential inversion rates as a strong determinant of bacterial population heterogeneity

por Lan, Freeman, Saba, Jason, Qian, Yili, Ross, Tyler, Landick, Robert, Venturelli, Ophelia S.
Publicado 2023

Evolution favors protein mutational robustness in sufficiently large populations

por Bloom, Jesse D, Lu, Zhongyi, Chen, David, Raval, Alpan, Venturelli, Ophelia S, Arnold, Frances H
Publicado 2007

Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics

por Baranwal, Mayank, Clark, Ryan L, Thompson, Jaron, Sun, Zeyu, Hero, Alfred O, Venturelli, Ophelia S
Publicado 2022

Programming mRNA decay to modulate synthetic circuit resource allocation

por Venturelli, Ophelia S., Tei, Mika, Bauer, Stefan, Chan, Leanne Jade G., Petzold, Christopher J., Arkin, Adam P
Publicado 2017

Investigating the dynamics of microbial consortia in spatially structured environments

por Gupta, Sonali, Ross, Tyler D., Gomez, Marcella M., Grant, Job L., Romero, Philip A., Venturelli, Ophelia S.
Publicado 2020

Programming bacteria for multiplexed DNA detection

por Cheng, Yu-Yu, Chen, Zhengyi, Cao, Xinyun, Ross, Tyler D., Falbel, Tanya G., Burton, Briana M., Venturelli, Ophelia S.
Publicado 2023

Negative interactions determine Clostridioides difficile growth in synthetic human gut communities

por Hromada, Susan, Qian, Yili, Jacobson, Tyler B, Clark, Ryan L, Watson, Lauren, Safdar, Nasia, Amador‐Noguez, Daniel, Venturelli, Ophelia S
Publicado 2021

Shaping human gut community assembly and butyrate production by controlling the arginine dihydrolase pathway

por Liu, Yiyi, Cheng, Yu-Yu, Zhou, Zhichao, Vivas, Eugenio I., Warren, Matthew F., Rey, Federico E., Anantharaman, Karthik, Venturelli, Ophelia S.
Publicado 2023

Design of synthetic human gut microbiome assembly and butyrate production

por Clark, Ryan L., Connors, Bryce M., Stevenson, David M., Hromada, Susan E., Hamilton, Joshua J., Amador-Noguez, Daniel, Venturelli, Ophelia S.
Publicado 2021

Efficient plasmid transfer via natural competence in a microbial co‐culture

por Cheng, Yu‐Yu, Zhou, Zhichao, Papadopoulos, James M, Zuke, Jason D, Falbel, Tanya G, Anantharaman, Karthik, Burton, Briana M, Venturelli, Ophelia S
Publicado 2023

Deciphering microbial interactions in synthetic human gut microbiome communities

por Venturelli, Ophelia S, Carr, Alex C, Fisher, Garth, Hsu, Ryan H, Lau, Rebecca, Bowen, Benjamin P, Hromada, Susan, Northen, Trent, Arkin, Adam P
Publicado 2018

Under‐Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle‐Based Approach for Microscale Cell Culture (Adv. Sci. 10/2022)

por Li, Chao, Humayun, Mouhita, Walker, Glenn M., Park, Keon Young, Connors, Bryce, Feng, Jun, Pellitteri Hahn, Molly C., Scarlett, Cameron O., Li, Jiayi, Feng, Yanbo, Clark, Ryan L., Hefti, Hunter, Schrope, Jonathan, Venturelli, Ophelia S., Beebe, David J.
Publicado 2022

Under‐Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle‐Based Approach for Microscale Cell Culture

por Li, Chao, Humayun, Mouhita, Walker, Glenn M., Park, Keon Young, Connors, Bryce, Feng, Jun, Pellitteri Hahn, Molly C., Scarlett, Cameron O., Li, Jiayi, Feng, Yanbo, Clark, Ryan L., Hefti, Hunter, Schrope, Jonathan, Venturelli, Ophelia S., Beebe, David J.
Publicado 2022

The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor

por Renault, Valérie M., Thekkat, Pramod U., Hoang, Kimmi L., White, Jamie L., Brady, Colleen A., Broz, Daniela Kenzelmann, Venturelli, Ophelia S., Johnson, Thomas M., Oskoui, Philip R., Xuan, Zhenyu, Santo, Evan E., Zhang, Michael Q., Vogel, Hannes, Attardi, Laura D., Brunet, Anne
Publicado 2011