Development of tools for the automated analysis of spectra generated by tandem mass spectrometry

por Ellingson, Sally, Hughes, Joe, Storey, Dylan, Weber, Rick, VerBerkmoes, Nathan
Publicado 2010

Metaproteomics Reveals Abundant Transposase Expression in Mutualistic Endosymbionts

por Kleiner, Manuel, Young, Jacque C., Shah, Manesh, VerBerkmoes, Nathan C., Dubilier, Nicole
Publicado 2013

Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities

por Hettich, Robert L, Russell, Alison L, VerBerkmoes, Nathan C, Shah, Manesh, Fraser-Liggett, Claire, Jansson, Janet K
Publicado 2010

Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

por Luck, Ashley N., Anderson, Kathryn G., McClung, Colleen M., VerBerkmoes, Nathan C., Foster, Jeremy M., Michalski, Michelle L., Slatko, Barton E.
Publicado 2015

A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

por Pan, Chongle, Park, Byung H, McDonald, William H, Carey, Patricia A, Banfield, Jillian F, VerBerkmoes, Nathan C, Hettich, Robert L, Samatova, Nagiza F
Publicado 2010

Proteomic identification of mammalian cell surface derived glycosylphosphatidylinositol-anchored proteins through selective glycan enrichment

por Cortes, Leslie K, Vainauskas, Saulius, Dai, Nan, McClung, Colleen M, Shah, Manesh, Benner, Jack S, Corrêa, Ivan R, VerBerkmoes, Nathan C, Taron, Christopher H
Publicado 2014

Metabolome-Proteome Differentiation Coupled to Microbial Divergence

por Wilmes, Paul, Bowen, Benjamin P., Thomas, Brian C., Mueller, Ryan S., Denef, Vincent J., VerBerkmoes, Nathan C., Hettich, Robert L., Northen, Trent R., Banfield, Jillian F.
Publicado 2010

Phage-Induced Expression of CRISPR-Associated Proteins Is Revealed by Shotgun Proteomics in Streptococcus thermophilus

por Young, Jacque C., Dill, Brian D., Pan, Chongle, Hettich, Robert L., Banfield, Jillian F., Shah, Manesh, Fremaux, Christophe, Horvath, Philippe, Barrangou, Rodolphe, VerBerkmoes, Nathan C.
Publicado 2012

Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge

por Thompson, Dorothea K, Chourey, Karuna, Wickham, Gene S, Thieman, Stephanie B, VerBerkmoes, Nathan C, Zhang, Bing, McCarthy, Andrea T, Rudisill, Matt A, Shah, Manesh, Hettich, Robert L
Publicado 2010

Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

por Cantarel, Brandi L., Erickson, Alison R., VerBerkmoes, Nathan C., Erickson, Brian K., Carey, Patricia A., Pan, Chongle, Shah, Manesh, Mongodin, Emmanuel F., Jansson, Janet K., Fraser-Liggett, Claire M., Hettich, Robert L.
Publicado 2011

The two-faced T cell epitope: Examining the host-microbe interface with JanusMatrix

por Moise, Leonard, Gutierrez, Andres H., Bailey-Kellogg, Chris, Terry, Frances, Leng, Qibin, Abdel Hady, Karim M., VerBerkmoes, Nathan C., Sztein, Marcelo B., Losikoff, Phyllis T., Martin, William D., Rothman, Alan L, De Groot, Anne S.
Publicado 2013

Ecological distribution and population physiology defined by proteomics in a natural microbial community

por Mueller, Ryan S, Denef, Vincent J, Kalnejais, Linda H, Suttle, K Blake, Thomas, Brian C, Wilmes, Paul, Smith, Richard L, Nordstrom, D Kirk, McCleskey, R Blaine, Shah, Manesh B, VerBerkmoes, Nathan C, Hettich, Robert L, Banfield, Jillian F
Publicado 2010

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

por Maier, Tanja V., Lucio, Marianna, Lee, Lang Ho, VerBerkmoes, Nathan C., Brislawn, Colin J., Bernhardt, Jörg, Lamendella, Regina, McDermott, Jason E., Bergeron, Nathalie, Heinzmann, Silke S., Morton, James T., González, Antonio, Ackermann, Gail, Knight, Rob, Riedel, Katharina, Krauss, Ronald M., Schmitt-Kopplin, Philippe, Jansson, Janet K.
Publicado 2017