Feature-by-Feature – Evaluating De Novo Sequence Assembly

por Vezzi, Francesco, Narzisi, Giuseppe, Mishra, Bud
Publicado 2012

GapFiller: a de novo assembly approach to fill the gap within paired reads

por Nadalin, Francesca, Vezzi, Francesco, Policriti, Alberto
Publicado 2012

Reevaluating Assembly Evaluations with Feature Response Curves: GAGE and Assemblathons

por Vezzi, Francesco, Narzisi, Giuseppe, Mishra, Bud
Publicado 2012

Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2

por Prezza, Nicola, Vezzi, Francesco, Käller, Max, Policriti, Alberto
Publicado 2016

GAM-NGS: genomic assemblies merger for next generation sequencing

por Vicedomini, Riccardo, Vezzi, Francesco, Scalabrin, Simone, Arvestad, Lars, Policriti, Alberto
Publicado 2013

BESST - Efficient scaffolding of large fragmented assemblies

por Sahlin, Kristoffer, Vezzi, Francesco, Nystedt, Björn, Lundeberg, Joakim, Arvestad, Lars
Publicado 2014

TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data

por Eisfeldt, Jesper, Vezzi, Francesco, Olason, Pall, Nilsson, Daniel, Lindstrand, Anna
Publicado 2017

Recommendations on e-infrastructures for next-generation sequencing

por Spjuth, Ola, Bongcam-Rudloff, Erik, Dahlberg, Johan, Dahlö, Martin, Kallio, Aleksi, Pireddu, Luca, Vezzi, Francesco, Korpelainen, Eija
Publicado 2016

De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping

por Olsen, Remi-Andre, Bunikis, Ignas, Tiukova, Ievgeniia, Holmberg, Kicki, Lötstedt, Britta, Pettersson, Olga Vinnere, Passoth, Volkmar, Käller, Max, Vezzi, Francesco
Publicado 2015

Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly

por Celorio-Mancera, Maria de la Paz, Wheat, Christopher W., Huss, Mikael, Vezzi, Francesco, Neethiraj, Ramprasad, Reimegård, Johan, Nylin, Sören, Janz, Niklas
Publicado 2016

Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women

por Engström, Karin, Wojdacz, Tomasz K., Marabita, Francesco, Ewels, Philip, Käller, Max, Vezzi, Francesco, Prezza, Nicola, Gruselius, Joel, Vahter, Marie, Broberg, Karin
Publicado 2016

Comprehensive structural variation genome map of individuals carrying complex chromosomal rearrangements

por Eisfeldt, Jesper, Pettersson, Maria, Vezzi, Francesco, Wincent, Josephine, Käller, Max, Gruselius, Joel, Nilsson, Daniel, Syk Lundberg, Elisabeth, Carvalho, Claudia M. B., Lindstrand, Anna
Publicado 2019

Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools

por Alexeyenko, Andrey, Nystedt, Björn, Vezzi, Francesco, Sherwood, Ellen, Ye, Rosa, Knudsen, Bjarne, Simonsen, Martin, Turner, Benjamin, de Jong, Pieter, Wu, Cheng-Cang, Lundeberg, Joakim
Publicado 2014

High-resolution detection of chromosomal rearrangements in leukemias through mate pair whole genome sequencing

por Tran, Anh Nhi, Taylan, Fulya, Zachariadis, Vasilios, Ivanov Öfverholm, Ingegerd, Lindstrand, Anna, Vezzi, Francesco, Lötstedt, Britta, Nordenskjöld, Magnus, Nordgren, Ann, Nilsson, Daniel, Barbany, Gisela
Publicado 2018

De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data

por Ameur, Adam, Che, Huiwen, Martin, Marcel, Bunikis, Ignas, Dahlberg, Johan, Höijer, Ida, Häggqvist, Susana, Vezzi, Francesco, Nordlund, Jessica, Olason, Pall, Feuk, Lars, Gyllensten, Ulf
Publicado 2018

Replicative and non-replicative mechanisms in the formation of clustered CNVs are indicated by whole genome characterization

por Nazaryan-Petersen, Lusine, Eisfeldt, Jesper, Pettersson, Maria, Lundin, Johanna, Nilsson, Daniel, Wincent, Josephine, Lieden, Agne, Lovmar, Lovisa, Ottosson, Jesper, Gacic, Jelena, Mäkitie, Outi, Nordgren, Ann, Vezzi, Francesco, Wirta, Valtteri, Käller, Max, Hjortshøj, Tina Duelund, Jespersgaard, Cathrine, Houssari, Rayan, Pignata, Laura, Bak, Mads, Tommerup, Niels, Lundberg, Elisabeth Syk, Tümer, Zeynep, Lindstrand, Anna
Publicado 2018

SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population

por Ameur, Adam, Dahlberg, Johan, Olason, Pall, Vezzi, Francesco, Karlsson, Robert, Martin, Marcel, Viklund, Johan, Kähäri, Andreas Kusalananda, Lundin, Pär, Che, Huiwen, Thutkawkorapin, Jessada, Eisfeldt, Jesper, Lampa, Samuel, Dahlberg, Mats, Hagberg, Jonas, Jareborg, Niclas, Liljedahl, Ulrika, Jonasson, Inger, Johansson, Åsa, Feuk, Lars, Lundeberg, Joakim, Syvänen, Ann-Christine, Lundin, Sverker, Nilsson, Daniel, Nystedt, Björn, Magnusson, Patrik KE, Gyllensten, Ulf
Publicado 2017

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

por Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F
Publicado 2013