Genepi: a blackboard framework for genome annotation

por Descorps-Declère, Stéphane, Ziébelin, Danielle, Rechenmann, François, Viari, Alain
Publicado 2006

Bacterial syntenies: an exact approach with gene quorum

por Deniélou, Yves-Pol, Sagot, Marie-France, Boyer, Frédéric, Viari, Alain
Publicado 2011

Biased mutational pattern and quasispecies hypothesis in H5N1 virus

por Gutiérrez, Ramona Alikiiteaga, Viari, Alain, Godelle, Bernard, Frutos, Roger, Buchy, Philippe
Publicado 2013

ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

por Riaz, Tiayyba, Shehzad, Wasim, Viari, Alain, Pompanon, François, Taberlet, Pierre, Coissac, Eric
Publicado 2011

The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes

por Smith, Adam Alexander Thil, Belda, Eugeni, Viari, Alain, Medigue, Claudine, Vallenet, David
Publicado 2012

GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins

por Durand, Patrick, Labarre, Laurent, Meil, Alain, Divo1, Jean-Louis, Vandenbrouck, Yves, Viari, Alain, Wojcik, Jérôme
Publicado 2006

UniPathway: a resource for the exploration and annotation of metabolic pathways

por Morgat, Anne, Coissac, Eric, Coudert, Elisabeth, Axelsen, Kristian B., Keller, Guillaume, Bairoch, Amos, Bridge, Alan, Bougueleret, Lydie, Xenarios, Ioannis, Viari, Alain
Publicado 2012

Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes

por Guillot, Laetitia, Delage, Ludovic, Viari, Alain, Vandenbrouck, Yves, Com, Emmanuelle, Ritter, Andrés, Lavigne, Régis, Marie, Dominique, Peterlongo, Pierre, Potin, Philippe, Pineau, Charles
Publicado 2019

Integrated analysis highlights APC11 protein expression as a likely new independent predictive marker for colorectal cancer

por Drouet, Youenn, Treilleux, Isabelle, Viari, Alain, Léon, Sophie, Devouassoux-Shisheboran, Mojgan, Voirin, Nicolas, de la Fouchardière, Christelle, Manship, Brigitte, Puisieux, Alain, Lasset, Christine, Moyret-Lalle, Caroline
Publicado 2018

Innovative approach for transcriptomic analysis of obligate intracellular pathogen: selective capture of transcribed sequences of Ehrlichia ruminantium

por Emboulé, Loïc, Daigle, France, Meyer, Damien F, Mari, Bernard, Pinarello, Valérie, Sheikboudou, Christian, Magnone, Virginie, Frutos, Roger, Viari, Alain, Barbry, Pascal, Martinez, Dominique, Lefrançois, Thierry, Vachiéry, Nathalie
Publicado 2009

Gene signature of circulating platelet‐bound neutrophils is associated with poor prognosis in cancer patients

por Lecot, Pacôme, Ardin, Maude, Dussurgey, Sébastien, Alcazer, Vincent, Moudombi, Lyvia, Pereira Abrantes, Manuela, Hubert, Margaux, Swalduz, Aurélie, Hernandez‐Vargas, Hector, Viari, Alain, Caux, Christophe, Michallet, Marie‐Cécile
Publicado 2022

A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes

por Foy, Jean-Philippe, Bazire, Louis, Ortiz-Cuaran, Sandra, Deneuve, Sophie, Kielbassa, Janice, Thomas, Emilie, Viari, Alain, Puisieux, Alain, Goudot, Patrick, Bertolus, Chloé, Foray, Nicolas, Kirova, Youlia, Verrelle, Pierre, Saintigny, Pierre
Publicado 2017

Identification of shared tumor epitopes from endogenous retroviruses inducing high-avidity cytotoxic T cells for cancer immunotherapy

por Bonaventura, Paola, Alcazer, Vincent, Mutez, Virginie, Tonon, Laurie, Martin, Juliette, Chuvin, Nicolas, Michel, Emilie, Boulos, Rasha E., Estornes, Yann, Valladeau-Guilemond, Jenny, Viari, Alain, Wang, Qing, Caux, Christophe, Depil, Stéphane
Publicado 2022

Immune and Genetic Signatures of Breast Carcinomas Triggering Anti-Yo–Associated Paraneoplastic Cerebellar Degeneration

por Peter, Elise, Treilleux, Isabelle, Wucher, Valentin, Jougla, Emma, Vogrig, Alberto, Pissaloux, Daniel, Paindavoine, Sandrine, Berthet, Justine, Picard, Géraldine, Rogemond, Véronique, Villard, Marine, Vincent, Clémentine, Tonon, Laurie, Viari, Alain, Honnorat, Jérôme, Dubois, Bertrand, Desestret, Virginie
Publicado 2022

HERVs characterize normal and leukemia stem cells and represent a source of shared epitopes for cancer immunotherapy

por Alcazer, Vincent, Bonaventura, Paola, Tonon, Laurie, Michel, Emilie, Mutez, Virginie, Fabres, Clémentine, Chuvin, Nicolas, Boulos, Rasha, Estornes, Yann, Maguer‐Satta, Véronique, Geistlich, Kevin, Viari, Alain, Metzeler, Klaus H., Hiddemann, Wolfgang, Batch, Aarif M. N., Herold, Tobias, Caux, Christophe, Depil, Stéphane
Publicado 2022

Immunological and classical subtypes of oral premalignant lesions

por Foy, Jean-Philippe, Bertolus, Chloé, Ortiz-Cuaran, Sandra, Albaret, Marie-Alexandra, Williams, William N, Lang, Wenhua, Destandau, Solène, Souza, Geneviève De, Sohier, Emilie, Kielbassa, Janice, Thomas, Emilie, Deneuve, Sophie, Goudot, Patrick, Puisieux, Alain, Viari, Alain, Mao, Li, Caux, Christophe, Lippman, SM, Saintigny, P
Publicado 2018

CDYL2 Epigenetically Regulates MIR124 to Control NF-κB/STAT3-Dependent Breast Cancer Cell Plasticity

por Siouda, Maha, Dujardin, Audrey D., Barbollat-Boutrand, Laetitia, Mendoza-Parra, Marco A., Gibert, Benjamin, Ouzounova, Maria, Bouaoud, Jebrane, Tonon, Laurie, Robert, Marie, Foy, Jean-Philippe, Lavergne, Vincent, Manie, Serge N., Viari, Alain, Puisieux, Alain, Ichim, Gabriel, Gronemeyer, Hinrich, Saintigny, Pierre, Mulligan, Peter
Publicado 2020

An Early Neoplasia Index (ENI10), Based on Molecular Identity of CD10 Cells and Associated Stemness Biomarkers, is a Predictor of Patient Outcome in Many Cancers

por Guyot, Boris, Clément, Flora, Drouet, Youenn, Schmidt, Xenia, Lefort, Sylvain, Delay, Emmanuel, Treilleux, Isabelle, Foy, Jean-Philippe, Jeanpierre, Sandrine, Thomas, Emilie, Kielbassa, Janice, Tonon, Laurie, Zhu, Helen He, Saintigny, Pierre, Gao, Wei-Qiang, de la Fouchardiere, Arnaud, Tirode, Franck, Viari, Alain, Blay, Jean-Yves, Maguer-Satta, Véronique
Publicado 2023

SMAD2/3 mediate oncogenic effects of TGF-β in the absence of SMAD4

por Bertrand-Chapel, Adrien, Caligaris, Cassandre, Fenouil, Tanguy, Savary, Clara, Aires, Sophie, Martel, Sylvie, Huchedé, Paul, Chassot, Christelle, Chauvet, Véronique, Cardot-Ruffino, Victoire, Morel, Anne-Pierre, Subtil, Fabien, Mohkam, Kayvan, Mabrut, Jean-Yves, Tonon, Laurie, Viari, Alain, Cassier, Philippe, Hervieu, Valérie, Castets, Marie, Mauviel, Alain, Sentis, Stéphanie, Bartholin, Laurent
Publicado 2022

Sorafenib in Molecularly Selected Cancer Patients: Final Analysis of the MOST-Plus Sorafenib Cohort

por Trédan, Olivier, Toulmonde, Maud, Le Tourneau, Christophe, Montane, Laure, Italiano, Antoine, Ray-Coquard, Isabelle, De La Fouchardière, Christelle, Bertucci, François, Gonçalves, Anthony, Gomez-Roca, Carlos, You, Benoit, Attignon, Valéry, Boyault, Sandrine, Cassier, Philippe A., Dufresne, Armelle, Tabone-Eglinger, Séverine, Viari, Alain, Sohier, Emilie, Kamal, Maud, Garin, Gwenaël, Blay, Jean-Yves, Pérol, David
Publicado 2023