Large-scale integration of small molecule-induced genome-wide transcriptional responses, Kinome-wide binding affinities and cell-growth inhibition profiles reveal global trends cha...

por Vidović, Dušica, Koleti, Amar, Schürer, Stephan C.
Publicado 2014

Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center

por Stathias, Vasileios, Koleti, Amar, Vidović, Dušica, Cooper, Daniel J., Jagodnik, Kathleen M., Terryn, Raymond, Forlin, Michele, Chung, Caty, Torre, Denis, Ayad, Nagi, Medvedovic, Mario, Ma'ayan, Avi, Pillai, Ajay, Schürer, Stephan C.
Publicado 2018

Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity

por Xiong, Yuguang, Liu, Tong, Chen, Tong, Hansen, Jens, Hu, Bin, Chen, Yibang, Jayaraman, Gomathi, Schürer, Stephan, Vidovic, Dusica, Goldfarb, Joseph, Sobie, Eric A., Birtwistle, Marc R., Iyengar, Ravi, Li, Hong, Azeloglu, Evren U.
Publicado 2022

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures

por Stathias, Vasileios, Turner, John, Koleti, Amar, Vidovic, Dusica, Cooper, Daniel, Fazel-Najafabadi, Mehdi, Pilarczyk, Marcin, Terryn, Raymond, Chung, Caty, Umeano, Afoma, Clarke, Daniel J B, Lachmann, Alexander, Evangelista, John Erol, Ma’ayan, Avi, Medvedovic, Mario, Schürer, Stephan C
Publicado 2020

Suppression of T(H)17 Differentiation and Autoimmunity by a Synthetic ROR Ligand

por Solt, Laura A., Kumar, Naresh, Nuhant, Philippe, Wang, Yongjun, Lauer, Janelle L., Liu, Jin, Istrate, Monica A., Kamenecka, Theodore M., Roush, William R., Vidović, Dušica, Schürer, Stephan C., Xu, Jihong, Wagoner, Gail, Drew, Paul D., Griffin, Patrick R., Burris, Thomas P.
Publicado 2011

Monkeypox viral nucleic acids detected using both DNA and RNA extraction workflows

por Sharkey, Mark E., Babler, Kristina M., Shukla, Bhavarth S., Abelson, Samantha M., Alsuliman, Bader, Amirali, Ayaaz, Comerford, Samuel, Grills, George S., Kumar, Naresh, Laine, Jennifer, Lee, Jisue, Lamar, Walter E., Mason, Christopher E., Penso, Johnathon, Reding, Brian D., Schürer, Stephan C., Stevenson, Mario, Vidović, Dušica, Solo-Gabriele, Helena M.
Publicado 2023

piNET: a versatile web platform for downstream analysis and visualization of proteomics data

por Shamsaei, Behrouz, Chojnacki, Szymon, Pilarczyk, Marcin, Najafabadi, Mehdi, Niu, Wen, Chen, Chuming, Ross, Karen, Matlock, Andrea, Muhlich, Jeremy, Chutipongtanate, Somchai, Zheng, Jie, Turner, John, Vidović, Dušica, Jaffe, Jake, MacCoss, Michael, Wu, Cathy, Pillai, Ajay, Ma’ayan, Avi, Schürer, Stephan, Kouril, Michal, Medvedovic, Mario, Meller, Jarek
Publicado 2020

Pharos 2023: an integrated resource for the understudied human proteome

por Kelleher, Keith J, Sheils, Timothy K, Mathias, Stephen L, Yang, Jeremy J, Metzger, Vincent T, Siramshetty, Vishal B, Nguyen, Dac-Trung, Jensen, Lars Juhl, Vidović, Dušica, Schürer, Stephan C, Holmes, Jayme, Sharma, Karlie R, Pillai, Ajay, Bologa, Cristian G, Edwards, Jeremy S, Mathé, Ewy A, Oprea, Tudor I
Publicado 2022

TCRD and Pharos 2021: mining the human proteome for disease biology

por Sheils, Timothy K, Mathias, Stephen L, Kelleher, Keith J, Siramshetty, Vishal B, Nguyen, Dac-Trung, Bologa, Cristian G, Jensen, Lars Juhl, Vidović, Dušica, Koleti, Amar, Schürer, Stephan C, Waller, Anna, Yang, Jeremy J, Holmes, Jayme, Bocci, Giovanni, Southall, Noel, Dharkar, Poorva, Mathé, Ewy, Simeonov, Anton, Oprea, Tudor I
Publicado 2020

Anti-Diabetic Actions of a Non-Agonist PPARγ Ligand Blocking Cdk5-Mediated Phosphorylation

por Choi, Jang Hyun, Banks, Alexander S., Kamenecka, Theodore M., Busby, Scott A., Chalmers, Michael J., Kumar, Naresh, Kuruvilla, Dana S., Shin, Youseung, He, Yuanjun, Bruning, John B., Marciano, David P., Cameron, Michael D., Laznik, Dina, Jurczak, Michael J., Schürer, Stephan C., Vidović, Dušica, Shulman, Gerald I., Spiegelman, Bruce M., Griffin, Patrick R.
Publicado 2011

Drug target ontology to classify and integrate drug discovery data

por Lin, Yu, Mehta, Saurabh, Küçük-McGinty, Hande, Turner, John Paul, Vidovic, Dusica, Forlin, Michele, Koleti, Amar, Nguyen, Dac-Trung, Jensen, Lars Juhl, Guha, Rajarshi, Mathias, Stephen L., Ursu, Oleg, Stathias, Vasileios, Duan, Jianbin, Nabizadeh, Nooshin, Chung, Caty, Mader, Christopher, Visser, Ubbo, Yang, Jeremy J., Bologa, Cristian G., Oprea, Tudor I., Schürer, Stephan C.
Publicado 2017

COVID-19 Prediction using Genomic Footprint of SARS-CoV-2 in Air, Surface Swab and Wastewater Samples

por Solo-Gabriele, Helena M., Kumar, Shelja, Abelson, Samantha, Penso, Johnathon, Contreras, Julio, Babler, Kristina M., Sharkey, Mark E., Mantero, Alejandro M. A., Lamar, Walter E., Tallon, John J., Kobetz, Erin, Solle, Natasha Schaefer, Shukla, Bhavarth S., Kenney, Richard J., Mason, Christopher E., Schürer, Stephan C., Vidovic, Dusica, Williams, Sion L., Grills, George S., Jayaweera, Dushyantha T., Mirsaeidi, Mehdi, Kumar, Naresh
Publicado 2022

Predicting COVID-19 cases using SARS-CoV-2 RNA in air, surface swab and wastewater samples

por Solo-Gabriele, Helena M., Kumar, Shelja, Abelson, Samantha, Penso, Johnathon, Contreras, Julio, Babler, Kristina M., Sharkey, Mark E., Mantero, Alejandro M.A., Lamar, Walter E., Tallon, John J., Kobetz, Erin, Solle, Natasha Schaefer, Shukla, Bhavarth S., Kenney, Richard J., Mason, Christopher E., Schürer, Stephan C., Vidovic, Dusica, Williams, Sion L., Grills, George S., Jayaweera, Dushyantha T., Mirsaeidi, Mehdi, Kumar, Naresh
Publicado 2023

Connecting omics signatures and revealing biological mechanisms with iLINCS

por Pilarczyk, Marcin, Fazel-Najafabadi, Mehdi, Kouril, Michal, Shamsaei, Behrouz, Vasiliauskas, Juozas, Niu, Wen, Mahi, Naim, Zhang, Lixia, Clark, Nicholas A., Ren, Yan, White, Shana, Karim, Rashid, Xu, Huan, Biesiada, Jacek, Bennett, Mark F., Davidson, Sarah E., Reichard, John F., Roberts, Kurt, Stathias, Vasileios, Koleti, Amar, Vidovic, Dusica, Clarke, Daniel J. B., Schürer, Stephan C., Ma’ayan, Avi, Meller, Jarek, Medvedovic, Mario
Publicado 2022

Degradation rates influence the ability of composite samples to represent 24-hourly means of SARS-CoV-2 and other microbiological target measures in wastewater

por Babler, Kristina M., Sharkey, Mark E., Abelson, Samantha, Amirali, Ayaaz, Benitez, Aymara, Cosculluela, Gabriella A., Grills, George S., Kumar, Naresh, Laine, Jennifer, Lamar, Walter, Lamm, Erik D., Lyu, Jiangnan, Mason, Christopher E., McCabe, Philip M., Raghavender, Joshi, Reding, Brian D., Roca, Matthew A., Schürer, Stephan C., Stevenson, Mario, Szeto, Angela, Tallon, John J., Vidović, Dusica, Zarnegarnia, Yalda, Solo-Gabriele, Helena M.
Publicado 2023

Pharos: Collating protein information to shed light on the druggable genome

por Nguyen, Dac-Trung, Mathias, Stephen, Bologa, Cristian, Brunak, Soren, Fernandez, Nicolas, Gaulton, Anna, Hersey, Anne, Holmes, Jayme, Jensen, Lars Juhl, Karlsson, Anneli, Liu, Guixia, Ma'ayan, Avi, Mandava, Geetha, Mani, Subramani, Mehta, Saurabh, Overington, John, Patel, Juhee, Rouillard, Andrew D., Schürer, Stephan, Sheils, Timothy, Simeonov, Anton, Sklar, Larry A., Southall, Noel, Ursu, Oleg, Vidovic, Dusica, Waller, Anna, Yang, Jeremy, Jadhav, Ajit, Oprea, Tudor I., Guha, Rajarshi
Publicado 2017

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data

por Koleti, Amar, Terryn, Raymond, Stathias, Vasileios, Chung, Caty, Cooper, Daniel J, Turner, John P, Vidović, Dušica, Forlin, Michele, Kelley, Tanya T, D’Urso, Alessandro, Allen, Bryce K, Torre, Denis, Jagodnik, Kathleen M, Wang, Lily, Jenkins, Sherry L, Mader, Christopher, Niu, Wen, Fazel, Mehdi, Mahi, Naim, Pilarczyk, Marcin, Clark, Nicholas, Shamsaei, Behrouz, Meller, Jarek, Vasiliauskas, Juozas, Reichard, John, Medvedovic, Mario, Ma’ayan, Avi, Pillai, Ajay, Schürer, Stephan C
Publicado 2018

Lessons learned from SARS-CoV-2 measurements in wastewater

por Sharkey, Mark E., Kumar, Naresh, Mantero, Alejandro M.A., Babler, Kristina M., Boone, Melinda M., Cardentey, Yoslayma, Cortizas, Elena M., Grills, George S., Herrin, James, Kemper, Jenny M., Kenney, Richard, Kobetz, Erin, Laine, Jennifer, Lamar, Walter E., Mader, Christopher C., Mason, Christopher E., Quintero, Anda Z., Reding, Brian D., Roca, Matthew A., Ryon, Krista, Solle, Natasha Schaefer, Schürer, Stephan C., Shukla, Bhavarth, Stevenson, Mario, Stone, Thomas, Tallon, John J., Venkatapuram, Sreeharsha S., Vidovic, Dusica, Williams, Sion L., Young, Benjamin, Solo-Gabriele, Helena M.
Publicado 2021

A library of induced pluripotent stem cells from clinically well-characterized, diverse healthy human individuals

por Schaniel, Christoph, Dhanan, Priyanka, Hu, Bin, Xiong, Yuguang, Raghunandan, Teeya, Gonzalez, David M., Dariolli, Rafael, D'Souza, Sunita L., Yadaw, Arjun S., Hansen, Jens, Jayaraman, Gomathi, Mathew, Bino, Machado, Moara, Berger, Seth I., Tripodi, Joseph, Najfeld, Vesna, Garg, Jalaj, Miller, Marc, Surlyn, Colleen S., Michelis, Katherine C., Tangirala, Neelima C., Weerahandi, Himali, Thomas, David C., Beaumont, Kristin G., Sebra, Robert, Mahajan, Milind, Schadt, Eric, Vidovic, Dusica, Schürer, Stephan C., Goldfarb, Joseph, Azeloglu, Evren U., Birtwistle, Marc R., Sobie, Eric A., Kovacic, Jason C., Dubois, Nicole C., Iyengar, Ravi
Publicado 2021

Relationships between SARS-CoV-2 in Wastewater and COVID-19 Clinical Cases and Hospitalizations, with and without Normalization against Indicators of Human Waste

por Zhan, Qingyu, Babler, Kristina M., Sharkey, Mark E., Amirali, Ayaaz, Beaver, Cynthia C., Boone, Melinda M., Comerford, Samuel, Cooper, Daniel, Cortizas, Elena M., Currall, Benjamin B., Foox, Jonathan, Grills, George S., Kobetz, Erin, Kumar, Naresh, Laine, Jennifer, Lamar, Walter E., Mantero, Alejandro M.A., Mason, Christopher E., Reding, Brian D., Robertson, Maria, Roca, Matthew A., Ryon, Krista, Schürer, Stephan C., Shukla, Bhavarth S., Solle, Natasha Schaefer, Stevenson, Mario, Tallon Jr, John J., Thomas, Collette, Thomas, Tori, Vidović, Dušica, Williams, Sion L., Yin, Xue, Solo-Gabriele, Helena M.
Publicado 2022