SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data

por Griswold, Taylor, Kapsak, Curtis, Chen, Jessica C., den Bakker, Henk C., Williams, Grant, Kelley, Alyssa, Vidyaprakash, Eshaw, Katz, Lee S.
Publicado 2021

Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA

por Joseph, Lavin A., Griswold, Taylor, Vidyaprakash, Eshaw, Im, Sung B., Williams, Grant M., Pouseele, Hannes A., Hise, Kelley B., Carleton, Heather A.
Publicado 2023

Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA

por Leeper, Molly M., Tolar, Beth M., Griswold, Taylor, Vidyaprakash, Eshaw, Hise, Kelley B., Williams, Grant M., Im, Sung B., Chen, Jessica C., Pouseele, Hannes, Carleton, Heather A.
Publicado 2023

Reoccurring Escherichia coli O157:H7 Strain Linked to Leafy Greens–Associated Outbreaks, 2016–2019

por Chen, Jessica C., Patel, Kane, Smith, Peyton A., Vidyaprakash, Eshaw, Snyder, Caroline, Tagg, Kaitlin A., Webb, Hattie E., Schroeder, Morgan N., Katz, Lee S., Rowe, Lori A., Howard, Dakota, Griswold, Taylor, Lindsey, Rebecca L., Carleton, Heather A.
Publicado 2023

Multistate outbreak of Salmonella Mbandaka infections linked to sweetened puffed wheat cereal – United States, 2018

por Keaton, Amelia A., Schwensohn, Colin A., Brandenburg, Joshua M., Pereira, Evelyn, Adcock, Brandon, Tecle, Selam, Hinnenkamp, Rachel, Havens, Jeff, Bailey, Kim, Applegate, Brad, Whitney, Pamela, Gibson, Deborah, Manion, Kathy, Griffin, Michelle, Ritter, Joy, Biskupiak, Carrie, Ajileye, Kadri, Golwalkar, Mugdha, Gosciminski, Michael, Viveiros, Brendalee, Caron, Genevieve, McCullough, Laine, Smith, Lori, Vidyaprakash, Eshaw, Doyle, Matthew, Hardy, Cerise, Elliot, Elisa L., Gieraltowski, Laura B.
Publicado 2022

Benchmark datasets for SARS-CoV-2 surveillance bioinformatics

por Xiaoli, Lingzi, Hagey, Jill V., Park, Daniel J., Gulvik, Christopher A., Young, Erin L., Alikhan, Nabil-Fareed, Lawsin, Adrian, Hassell, Norman, Knipe, Kristen, Oakeson, Kelly F., Retchless, Adam C., Shakya, Migun, Lo, Chien-Chi, Chain, Patrick, Page, Andrew J., Metcalf, Benjamin J., Su, Michelle, Rowell, Jessica, Vidyaprakash, Eshaw, Paden, Clinton R., Huang, Andrew D., Roellig, Dawn, Patel, Ketan, Winglee, Kathryn, Weigand, Michael R., Katz, Lee S.
Publicado 2022

Agritourism and Kidding Season: A Large Outbreak of Human Shiga Toxin-Producing Escherichia coli O157 (STEC O157) Infections Linked to a Goat Dairy Farm—Connecticut, 2016

por Nichols, Megin C., Gacek, Paul, Phan, Quyen, Gambino-Shirley, Kelly J., Gollarza, Lauren M., Schroeder, Morgan N., Mercante, Alexandra, Mullins, Jocelyn, Blackstock, Anna, Laughlin, Mark E., Olson, Samantha M., Pizzo, Eugene, Nguyen, Tu Ngoc, Mank, Laurn, Holmes-Talbot, Kimberly, McNutt, Alycia, Noel, Diane, Muyombwe, Anthony, Razeq, Jafar H., Lis, Mary Jane, Sherman, Bruce, Kasacek, Wayne, Whitlock, Laura, Strockbine, Nancy, Martin, Haley, Vidyaprakash, Eshaw, McCormack, Patrick, Cartter, Matthew
Publicado 2021