Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System

por Vieira, Filipe G., Rozas, Julio
Publicado 2011

Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution

por Vieira, Filipe G, Sánchez-Gracia, Alejandro, Rozas, Julio
Publicado 2007

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

por Vieira, Filipe G., Fumagalli, Matteo, Albrechtsen, Anders, Nielsen, Rasmus
Publicado 2013

Asian wild rice is a hybrid swarm with extensive gene flow and feralization from domesticated rice

por Wang, Hongru, Vieira, Filipe G., Crawford, Jacob E., Chu, Chengcai, Nielsen, Rasmus
Publicado 2017

Mycobacterial Phylogenomics: An Enhanced Method for Gene Turnover Analysis Reveals Uneven Levels of Gene Gain and Loss among Species and Gene Families

por Librado, Pablo, Vieira, Filipe G., Sánchez-Gracia, Alejandro, Kolokotronis, Sergios-Orestis, Rozas, Julio
Publicado 2014

Unique Features of Odorant-Binding Proteins of the Parasitoid Wasp Nasonia vitripennis Revealed by Genome Annotation and Comparative Analyses

por Vieira, Filipe G., Forêt, Sylvain, He, Xiaoli, Rozas, Julio, Field, Linda M., Zhou, Jing-Jiang
Publicado 2012

Germline RET Leu56Met Variant Is Likely Not Causative of Multiple Endocrine Neoplasia Type 2

por Hansen, Anna Reimer, Borgwardt, Line, Rasmussen, Åse Krogh, Godballe, Christian, Poulsen, Morten Møller, Vieira, Filipe G., Mathiesen, Jes Sloth, Rossing, Maria
Publicado 2021

Male‐biased gene expression resolves sexual conflict through the evolution of sex‐specific genetic architecture

por Wright, Alison E., Fumagalli, Matteo, Cooney, Christopher R., Bloch, Natasha I., Vieira, Filipe G., Buechel, Severine D., Kolm, Niclas, Mank, Judith E.
Publicado 2018

Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans

por Martin, Michael D., Vieira, Filipe G., Ho, Simon Y.W., Wales, Nathan, Schubert, Mikkel, Seguin-Orlando, Andaine, Ristaino, Jean B., Gilbert, M. Thomas P.
Publicado 2016

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines

por Hernández, Yözen, Bernstein, Rocky, Pagan, Pedro, Vargas, Levy, McCaig, William, Ramrattan, Girish, Akther, Saymon, Larracuente, Amanda, Di, Lia, Vieira, Filipe G., Qiu, Wei-Gang
Publicado 2018

No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon

por Barnett, Ross, Sinding, Mikkel-Holder S., Vieira, Filipe G., Mendoza, Marie Lisandra Zepeda, Bonnet, Matthieu, Araldi, Alessandro, Kienast, Ivonne, Zambarda, Alice, Yamaguchi, Nobuyuki, Henschel, Philipp, Gilbert, M. Thomas P.
Publicado 2018

Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

por Sinding, Mikkel-Holger S., Ciucani, Marta M., Ramos-Madrigal, Jazmín, Carmagnini, Alberto, Rasmussen, Jacob Agerbo, Feng, Shaohong, Chen, Guangji, Vieira, Filipe G., Mattiangeli, Valeria, Ganjoo, Rajinder K., Larson, Greger, Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, Laurent, Gilbert, M. Thomas P., Bradley, Daniel G.
Publicado 2021

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

por Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, Christian, Geng, Chunyu, Liu, Shanlin, Sinding, Mikkel-Holger S, Kuderna, Lukas F K, Zhang, Wenwei, Fu, Shujin, Vieira, Filipe G, Germonpré, Mietje, Bocherens, Hervé, Fedorov, Sergey, Petersen, Bent, Sicheritz-Pontén, Thomas, Marques-Bonet, Tomas, Zhang, Guojie, Jiang, Hui, Gilbert, M Thomas P
Publicado 2017

Population genomics of grey wolves and wolf-like canids in North America

por Sinding, Mikkel-Holger S., Gopalakrishan, Shyam, Vieira, Filipe G., Samaniego Castruita, Jose A., Raundrup, Katrine, Heide Jørgensen, Mads Peter, Meldgaard, Morten, Petersen, Bent, Sicheritz-Ponten, Thomas, Mikkelsen, Johan Brus, Marquard-Petersen, Ulf, Dietz, Rune, Sonne, Christian, Dalén, Love, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.
Publicado 2018

Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

por Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, Christian, Geng, Chunyu, Liu, Shanlin, Sinding, Mikkel-Holger S, Kuderna, Lukas F K, Zhang, Wenwei, Fu, Shujin, Vieira, Filipe G, Germonpré, Mietje, Bocherens, Hervé, Fedorov, Sergey, Petersen, Bent, Sicheritz-Pontén, Thomas, Marques-Bonet, Tomas, Zhang, Guojie, Jiang, Hui, Gilbert, M Thomas P
Publicado 2018

Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

por Sánchez‐Barreiro, Fátima, Gopalakrishnan, Shyam, Ramos‐Madrigal, Jazmín, Westbury, Michael V., de Manuel, Marc, Margaryan, Ashot, Ciucani, Marta M., Vieira, Filipe G., Patramanis, Yannis, Kalthoff, Daniela C., Timmons, Zena, Sicheritz‐Pontén, Thomas, Dalén, Love, Ryder, Oliver A., Zhang, Guojie, Marquès‐Bonet, Tomás, Moodley, Yoshan, Gilbert, M. Thomas P.
Publicado 2021

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

por Foote, Andrew D., Vijay, Nagarjun, Ávila-Arcos, María C., Baird, Robin W., Durban, John W., Fumagalli, Matteo, Gibbs, Richard A., Hanson, M. Bradley, Korneliussen, Thorfinn S., Martin, Michael D., Robertson, Kelly M., Sousa, Vitor C., Vieira, Filipe G., Vinař, Tomáš, Wade, Paul, Worley, Kim C., Excoffier, Laurent, Morin, Phillip A., Gilbert, M. Thomas P., Wolf, Jochen B.W.
Publicado 2016

Origin and expansion of the world’s most widespread pinniped: Range‐wide population genomics of the harbour seal (Phoca vitulina)

por Liu, Xiaodong, Rønhøj Schjøtt, Suzanne, Granquist, Sandra M., Rosing‐Asvid, Aqqalu, Dietz, Rune, Teilmann, Jonas, Galatius, Anders, Cammen, Kristina, O’Corry‐Crowe, Greg, Harding, Karin, Härkönen, Tero, Hall, Ailsa, Carroll, Emma L., Kobayashi, Yumi, Hammill, Mike, Stenson, Garry, Kirstine Frie, Anne, Lydersen, Christian, Kovacs, Kit M., Andersen, Liselotte W., Hoffman, Joseph I., Goodman, Simon J., Vieira, Filipe G., Heller, Rasmus, Moltke, Ida, Tange Olsen, Morten
Publicado 2022

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

por Gopalakrishnan, Shyam, Sinding, Mikkel-Holger S., Ramos-Madrigal, Jazmín, Niemann, Jonas, Samaniego Castruita, Jose A., Vieira, Filipe G., Carøe, Christian, Montero, Marc de Manuel, Kuderna, Lukas, Serres, Aitor, González-Basallote, Víctor Manuel, Liu, Yan-Hu, Wang, Guo-Dong, Marques-Bonet, Tomas, Mirarab, Siavash, Fernandes, Carlos, Gaubert, Philippe, Koepfli, Klaus-Peter, Budd, Jane, Rueness, Eli Knispel, Heide-Jørgensen, Mads Peter, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.
Publicado 2018

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

por Gopalakrishnan, Shyam, Sinding, Mikkel-Holger S., Ramos-Madrigal, Jazmín, Niemann, Jonas, Samaniego Castruita, Jose A., Vieira, Filipe G., Carøe, Christian, de Manuel Montero, Marc, Kuderna, Lukas, Serres, Aitor, González-Basallote, Víctor Manuel, Liu, Yan-Hu, Wang, Guo-Dong, Marques-Bonet, Tomas, Mirarab, Siavash, Fernandes, Carlos, Gaubert, Philippe, Koepfli, Klaus-Peter, Budd, Jane, Rueness, Eli Knispel, Sillero, Claudio, Heide-Jørgensen, Mads Peter, Petersen, Bent, Sicheritz-Ponten, Thomas, Bachmann, Lutz, Wiig, Øystein, Hansen, Anders J., Gilbert, M. Thomas P.
Publicado 2019