PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

por Gordon, Sean P., Levy, Joshua J., Vogel, John P.
Publicado 2019

Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum

por Collier, Ray, Bragg, Jennifer, Hernandez, Bryan T., Vogel, John P., Thilmony, Roger
Publicado 2016

A New Method to Correct for Habitat Filtering in Microbial Correlation Networks

por Brisson, Vanessa, Schmidt, Jennifer, Northen, Trent R., Vogel, John P., Gaudin, Amélie
Publicado 2019

Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium dista...

por Stritt, Christoph, Gordon, Sean P, Wicker, Thomas, Vogel, John P, Roulin, Anne C
Publicado 2017

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon

por Vogel, John P, Tuna, Metin, Budak, Hikmet, Huo, Naxin, Gu, Yong Q, Steinwand, Michael A
Publicado 2009

Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon

por Tyler, Ludmila, Bragg, Jennifer N, Wu, Jiajie, Yang, Xiaohan, Tuskan, Gerald A, Vogel, John P
Publicado 2010

Brachypodium sylvaticum, a Model for Perennial Grasses: Transformation and Inbred Line Development

por Steinwand, Michael A., Young, Hugh A., Bragg, Jennifer N., Tobias, Christian M., Vogel, John P.
Publicado 2013

Metabotyping as a Stopover in Genome-to-Phenome Mapping

por Handakumbura, Pubudu P., Stanfill, Bryan, Rivas-Ubach, Albert, Fortin, Dan, Vogel, John P., Jansson, Christer
Publicado 2019

Cross-species functional diversity within the PIN auxin efflux protein family

por O'Connor, Devin Lee, Elton, Samuel, Ticchiarelli, Fabrizio, Hsia, Mon Mandy, Vogel, John P, Leyser, Ottoline
Publicado 2017

Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil

por Brisson, Vanessa L., Schmidt, Jennifer E., Northen, Trent R., Vogel, John P., Gaudin, Amélie C. M.
Publicado 2019

A Division in PIN-Mediated Auxin Patterning during Organ Initiation in Grasses

por O'Connor, Devin L., Runions, Adam, Sluis, Aaron, Bragg, Jennifer, Vogel, John P., Prusinkiewicz, Przemyslaw, Hake, Sarah
Publicado 2014

The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum

por Borowska‐Zuchowska, Natalia, Kovarik, Ales, Robaszkiewicz, Ewa, Tuna, Metin, Tuna, Gulsemin Savas, Gordon, Sean, Vogel, John P., Hasterok, Robert
Publicado 2020

PHYTOCHROME C regulation of photoperiodic flowering via PHOTOPERIOD1 is mediated by EARLY FLOWERING 3 in Brachypodium distachyon

por Woods, Daniel P., Li, Weiya, Sibout, Richard, Shao, Mingqin, Laudencia-Chingcuanco, Debbie, Vogel, John P., Dubcovsky, Jorge, Amasino, Richard M.
Publicado 2023

Selection and phenotypic characterization of a core collection of Brachypodium distachyon inbred lines

por Tyler, Ludmila, Fangel, Jonatan U, Fagerström, Alexandra Dotson, Steinwand, Michael A, Raab, Theodore K, Willats, William GT, Vogel, John P
Publicado 2014

Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance

por Toubiana, David, Sade, Nir, Liu, Lifeng, Rubio Wilhelmi, Maria del Mar, Brotman, Yariv, Luzarowska, Urszula, Vogel, John P., Blumwald, Eduardo
Publicado 2020

Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought

por Spindel, Jennifer E., Dahlberg, Jeffery, Colgan, Matthew, Hollingsworth, Joy, Sievert, Julie, Staggenborg, Scott H., Hutmacher, Robert, Jansson, Christer, Vogel, John P.
Publicado 2018

Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection

por Bragg, Jennifer N., Wu, Jiajie, Gordon, Sean P., Guttman, Mara E., Thilmony, Roger, Lazo, Gerard R., Gu, Yong Q., Vogel, John P.
Publicado 2012

A Truncated NLR Protein, TIR-NBS2, Is Required for Activated Defense Responses in the exo70B1 Mutant

por Zhao, Ting, Rui, Lu, Li, Juan, Nishimura, Marc T., Vogel, John P., Liu, Na, Liu, Simu, Zhao, Yaofei, Dangl, Jeffery L., Tang, Dingzhong
Publicado 2015

BdCESA7, BdCESA8, and BdPMT Utility Promoter Constructs for Targeted Expression to Secondary Cell-Wall-Forming Cells of Grasses

por Petrik, Deborah L., Cass, Cynthia L., Padmakshan, Dharshana, Foster, Cliff E., Vogel, John P., Karlen, Steven D., Ralph, John, Sedbrook, John C.
Publicado 2016

Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species

por Contreras-Moreira, Bruno, Cantalapiedra, Carlos P., García-Pereira, María J., Gordon, Sean P., Vogel, John P., Igartua, Ernesto, Casas, Ana M., Vinuesa, Pablo
Publicado 2017