Jaccard index based similarity measure to compare transcription factor binding site models

por Vorontsov, Ilya E, Kulakovskiy, Ivan V, Makeev, Vsevolod J
Publicado 2013

EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes

por Marakulina, Daria, Vorontsov, Ilya E, Kulakovskiy, Ivan V, Lennartsson, Andreas, Drabløs, Finn, Medvedeva, Yulia A
Publicado 2022

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models

por Kulakovskiy, Ivan V., Medvedeva, Yulia A., Schaefer, Ulf, Kasianov, Artem S., Vorontsov, Ilya E., Bajic, Vladimir B., Makeev, Vsevolod J.
Publicado 2013

Negative selection maintains transcription factor binding motifs in human cancer

por Vorontsov, Ilya E., Khimulya, Grigory, Lukianova, Elena N., Nikolaeva, Daria D., Eliseeva, Irina A., Kulakovskiy, Ivan V., Makeev, Vsevolod J.
Publicado 2016

Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data

por Vorontsov, Ilya E., Fedorova, Alla D., Yevshin, Ivan S., Sharipov, Ruslan N., Kolpakov, Fedor A., Makeev, Vsevolod J., Kulakovskiy, Ivan V.
Publicado 2018

EpiFactors: a comprehensive database of human epigenetic factors and complexes

por Medvedeva, Yulia A., Lennartsson, Andreas, Ehsani, Rezvan, Kulakovskiy, Ivan V., Vorontsov, Ilya E., Panahandeh, Pouda, Khimulya, Grigory, Kasukawa, Takeya, Drabløs, Finn
Publicado 2015

What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants

por Penzar, Dmitry D., Zinkevich, Arsenii O., Vorontsov, Ilya E., Sitnik, Vasily V., Favorov, Alexander V., Makeev, Vsevolod J., Kulakovskiy, Ivan V.
Publicado 2019

A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease

por Sethi, Siddharth, Vorontsov, Ilya E., Kulakovskiy, Ivan V., Greenaway, Simon, Williams, John, Makeev, Vsevolod J., Brown, Steve D. M., Simon, Michelle M., Mallon, Ann-Marie
Publicado 2020

The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region

por Afanasyeva, Marina A., Putlyaeva, Lidia V., Demin, Denis E., Kulakovskiy, Ivan V., Vorontsov, Ilya E., Fridman, Marina V., Makeev, Vsevolod J., Kuprash, Dmitry V., Schwartz, Anton M.
Publicado 2017

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

por Kulakovskiy, Ivan V., Vorontsov, Ilya E., Yevshin, Ivan S., Soboleva, Anastasiia V., Kasianov, Artem S., Ashoor, Haitham, Ba-alawi, Wail, Bajic, Vladimir B., Medvedeva, Yulia A., Kolpakov, Fedor A., Makeev, Vsevolod J.
Publicado 2016

ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs

por Boytsov, Alexandr, Abramov, Sergey, Aiusheeva, Ariuna Z, Kasianova, Alexandra M, Baulin, Eugene, Kuznetsov, Ivan A, Aulchenko, Yurii S, Kolmykov, Semyon, Yevshin, Ivan, Kolpakov, Fedor, Vorontsov, Ilya E, Makeev, Vsevolod J, Kulakovskiy, Ivan V
Publicado 2022

Landscape of allele-specific transcription factor binding in the human genome

por Abramov, Sergey, Boytsov, Alexandr, Bykova, Daria, Penzar, Dmitry D., Yevshin, Ivan, Kolmykov, Semyon K., Fridman, Marina V., Favorov, Alexander V., Vorontsov, Ilya E., Baulin, Eugene, Kolpakov, Fedor, Makeev, Vsevolod J., Kulakovskiy, Ivan V.
Publicado 2021

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

por Kulakovskiy, Ivan V, Vorontsov, Ilya E, Yevshin, Ivan S, Sharipov, Ruslan N, Fedorova, Alla D, Rumynskiy, Eugene I, Medvedeva, Yulia A, Magana-Mora, Arturo, Bajic, Vladimir B, Papatsenko, Dmitry A, Kolpakov, Fedor A, Makeev, Vsevolod J
Publicado 2018

Functional annotation of human long noncoding RNAs via molecular phenotyping

por Ramilowski, Jordan A., Yip, Chi Wai, Agrawal, Saumya, Chang, Jen-Chien, Ciani, Yari, Kulakovskiy, Ivan V., Mendez, Mickaël, Ooi, Jasmine Li Ching, Ouyang, John F., Parkinson, Nick, Petri, Andreas, Roos, Leonie, Severin, Jessica, Yasuzawa, Kayoko, Abugessaisa, Imad, Akalin, Altuna, Antonov, Ivan V., Arner, Erik, Bonetti, Alessandro, Bono, Hidemasa, Borsari, Beatrice, Brombacher, Frank, Cameron, Christopher J.F., Cannistraci, Carlo Vittorio, Cardenas, Ryan, Cardon, Melissa, Chang, Howard, Dostie, Josée, Ducoli, Luca, Favorov, Alexander, Fort, Alexandre, Garrido, Diego, Gil, Noa, Gimenez, Juliette, Guler, Reto, Handoko, Lusy, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Kosuke, Hayatsu, Norihito, Heutink, Peter, Hirose, Tetsuro, Imada, Eddie L., Itoh, Masayoshi, Kaczkowski, Bogumil, Kanhere, Aditi, Kawabata, Emily, Kawaji, Hideya, Kawashima, Tsugumi, Kelly, S. Thomas, Kojima, Miki, Kondo, Naoto, Koseki, Haruhiko, Kouno, Tsukasa, Kratz, Anton, Kurowska-Stolarska, Mariola, Kwon, Andrew Tae Jun, Leek, Jeffrey, Lennartsson, Andreas, Lizio, Marina, López-Redondo, Fernando, Luginbühl, Joachim, Maeda, Shiori, Makeev, Vsevolod J., Marchionni, Luigi, Medvedeva, Yulia A., Minoda, Aki, Müller, Ferenc, Muñoz-Aguirre, Manuel, Murata, Mitsuyoshi, Nishiyori, Hiromi, Nitta, Kazuhiro R., Noguchi, Shuhei, Noro, Yukihiko, Nurtdinov, Ramil, Okazaki, Yasushi, Orlando, Valerio, Paquette, Denis, Parr, Callum J.C., Rackham, Owen J.L., Rizzu, Patrizia, Sánchez Martinez, Diego Fernando, Sandelin, Albin, Sanjana, Pillay, Semple, Colin A.M., Shibayama, Youtaro, Sivaraman, Divya M., Suzuki, Takahiro, Szumowski, Suzannah C., Tagami, Michihira, Taylor, Martin S., Terao, Chikashi, Thodberg, Malte, Thongjuea, Supat, Tripathi, Vidisha, Ulitsky, Igor, Verardo, Roberto, Vorontsov, Ilya E., Yamamoto, Chinatsu, Young, Robert S., Baillie, J. Kenneth, Forrest, Alistair R.R., Guigó, Roderic, Hoffman, Michael M., Hon, Chung Chau, Kasukawa, Takeya, Kauppinen, Sakari, Kere, Juha, Lenhard, Boris, Schneider, Claudio, Suzuki, Harukazu, Yagi, Ken, de Hoon, Michiel J.L., Shin, Jay W., Carninci, Piero
Publicado 2020