AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization

por Willems, Sander, Voytik, Eugenia, Skowronek, Patricia, Strauss, Maximilian T., Mann, Matthias
Publicado 2021

AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge

por Voytik, Eugenia, Bludau, Isabell, Willems, Sander, Hansen, Fynn M, Brunner, Andreas-David, Strauss, Maximilian T, Mann, Matthias
Publicado 2021

AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics

por Zeng, Wen-Feng, Zhou, Xie-Xuan, Willems, Sander, Ammar, Constantin, Wahle, Maria, Bludau, Isabell, Voytik, Eugenia, Strauss, Maximillian T., Mann, Matthias
Publicado 2022

Deep learning the collisional cross sections of the peptide universe from a million experimental values

por Meier, Florian, Köhler, Niklas D., Brunner, Andreas-David, Wanka, Jean-Marc H., Voytik, Eugenia, Strauss, Maximilian T., Theis, Fabian J., Mann, Matthias
Publicado 2021

Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF

por Skowronek, Patricia, Thielert, Marvin, Voytik, Eugenia, Tanzer, Maria C., Hansen, Fynn M., Willems, Sander, Karayel, Ozge, Brunner, Andreas-David, Meier, Florian, Mann, Matthias
Publicado 2022

Plasma Proteome Profiling to detect and avoid sample‐related biases in biomarker studies

por Geyer, Philipp E, Voytik, Eugenia, Treit, Peter V, Doll, Sophia, Kleinhempel, Alisa, Niu, Lili, Müller, Johannes B, Buchholtz, Marie‐Luise, Bader, Jakob M, Teupser, Daniel, Holdt, Lesca M, Mann, Matthias
Publicado 2019