A Profile Hidden Markov Model to investigate the distribution and frequency of LanB-encoding lantibiotic modification genes in the human oral and gut microbiome

por Walsh, Calum J., Guinane, Caitriona M., O’ Toole, Paul W., Cotter, Paul D.
Publicado 2017

Pervasive genotype-by-environment interactions shape the fitness effects of antibiotic resistance mutations

por Soley, Jake K., Jago, Matthew, Walsh, Calum J., Khomarbaghi, Zahra, Howden, Benjamin P., Lagator, Mato
Publicado 2023

The probiotic L. casei LC-XCAL™ improves metabolic health in a diet-induced obesity mouse model without altering the microbiome

por Walsh, Calum J., Healy, Selena, O’Toole, Paul W., Murphy, Eileen F., Cotter, Paul D.
Publicado 2020

In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project’s reference genome database

por Walsh, Calum J., Guinane, Caitriona M., Hill, Colin, Ross, R. Paul, O’Toole, Paul W., Cotter, Paul D.
Publicado 2015

Shotgun sequencing of the vaginal microbiome reveals both a species and functional potential signature of preterm birth

por Feehily, Conor, Crosby, David, Walsh, Calum J., Lawton, Elaine M., Higgins, Shane, McAuliffe, Fionnuala M., Cotter, Paul D.
Publicado 2020

In Vitro and In Silico Based Approaches to Identify Potential Novel Bacteriocins from the Athlete Gut Microbiome of an Elite Athlete Cohort

por Wosinska, Laura, Walsh, Calum J., O’Connor, Paula M., Lawton, Elaine M., Cotter, Paul D., Guinane, Caitriona M., O’Sullivan, Orla
Publicado 2022

Genotypic and Phenotypic Characterization of Fecal Staphylococcus epidermidis Isolates Suggests Plasticity to Adapt to Different Human Body Sites

por Garcia-Gutierrez, Enriqueta, Walsh, Calum J., Sayavedra, Lizbeth, Diaz-Calvo, Teresa, Thapa, Dinesh, Ruas-Madiedo, Patricia, Mayer, Melinda J., Cotter, Paul D., Narbad, Arjan
Publicado 2020

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study

por Linnane, Barry, Walsh, Aaron M., Walsh, Calum J., Crispie, Fiona, O’Sullivan, Orla, Cotter, Paul D., McDermott, Michael, Renwick, Julie, McNally, Paul
Publicado 2021

Dairy Products and Dairy-Processing Environments as a Reservoir of Antibiotic Resistance and Quorum-Quenching Determinants as Revealed through Functional Metagenomics

por Alexa (Oniciuc), Elena A., Walsh, Calum J., Coughlan, Laura M., Awad, Amal, Simon, Cezara A., Ruiz, Lorena, Crispie, Fiona, Cotter, Paul D., Alvarez-Ordóñez, Avelino
Publicado 2020

First evidence of production of the lantibiotic nisin P

por Garcia-Gutierrez, Enriqueta, O’Connor, Paula M., Saalbach, Gerhard, Walsh, Calum J., Hegarty, James W., Guinane, Caitriona M., Mayer, Melinda J., Narbad, Arjan, Cotter, Paul D.
Publicado 2020

Identification of ADS024, a newly characterized strain of Bacillus velezensis with direct Clostridiodes difficile killing and toxin degradation bio-activities

por O’Donnell, Michelle M., Hegarty, James W., Healy, Brian, Schulz, Sarah, Walsh, Calum J., Hill, Colin, Ross, R. Paul, Rea, Mary C., Farquhar, Ronald, Chesnel, Laurent
Publicado 2022

Effect of a bacteriocin-producing Streptococcus salivarius on the pathogen Fusobacterium nucleatum in a model of the human distal colon

por Lawrence, Garreth W., McCarthy, Niamh, Walsh, Calum J., Kunyoshi, Tais M., Lawton, Elaine M., O’Connor, Paula M., Begley, Máire, Cotter, Paul D., Guinane, Caitriona M.
Publicado 2022

Nisin J, a Novel Natural Nisin Variant, Is Produced by Staphylococcus capitis Sourced from the Human Skin Microbiota

por O’Sullivan, Julie N., O’Connor, Paula M., Rea, Mary C., O’Sullivan, Orla, Walsh, Calum J., Healy, Brian, Mathur, Harsh, Field, Des, Hill, Colin, Ross, R. Paul
Publicado 2020

Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants

por Leech, John, Cabrera-Rubio, Raul, Walsh, Aaron M., Macori, Guerrino, Walsh, Calum J., Barton, Wiley, Finnegan, Laura, Crispie, Fiona, O’Sullivan, Orla, Claesson, Marcus J., Cotter, Paul D.
Publicado 2020

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome

por Yap, Min, Feehily, Conor, Walsh, Calum J., Fenelon, Mark, Murphy, Eileen F., McAuliffe, Fionnuala M., van Sinderen, Douwe, O’Toole, Paul W., O’Sullivan, Orla, Cotter, Paul D.
Publicado 2020

The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes

por Collins, Fergus W. J., Walsh, Calum J., Gomez-Sala, Beatriz, Guijarro-García, Elena, Stokes, David, Jakobsdóttir, Klara B., Kristjánsson, Kristján, Burns, Finlay, Cotter, Paul D., Rea, Mary C., Hill, Colin, Ross, R. Paul
Publicado 2021

Maternal breastfeeding is associated with offspring microbiome diversity; a secondary analysis of the MicrobeMom randomized control trial

por Yelverton, Cara A., Killeen, Sarah Louise, Feehily, Conor, Moore, Rebecca L., Callaghan, Shauna L., Geraghty, Aisling A., Byrne, David F., Walsh, Calum J., Lawton, Elaine M., Murphy, Eileen F., Van Sinderen, Douwe, Cotter, Paul D., McAuliffe, Fionnuala M.
Publicado 2023

A high-throughput cytotoxicity screening platform reveals agr-independent mutations in bacteraemia-associated Staphylococcus aureus that promote intracellular persistence

por Hachani, Abderrahman, Giulieri, Stefano G, Guérillot, Romain, Walsh, Calum J, Herisse, Marion, Soe, Ye Mon, Baines, Sarah L, Thomas, David R, Cheung, Shane Doris, Hayes, Ashleigh S, Cho, Ellie, Newton, Hayley J, Pidot, Sacha, Massey, Ruth C, Howden, Benjamin P, Stinear, Timothy P
Publicado 2023

Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity

por Cobo-Díaz, José F., Alvarez-Molina, Adrián, Alexa, Elena A., Walsh, Calum J., Mencía-Ares, Oscar, Puente-Gómez, Paula, Likotrafiti, Eleni, Fernández-Gómez, Paula, Prieto, Bernardo, Crispie, Fiona, Ruiz, Lorena, González-Raurich, Montserrat, López, Mercedes, Prieto, Miguel, Cotter, Paul, Alvarez-Ordóñez, Avelino
Publicado 2021

Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach

por Feehily, Conor, O’Neill, Ian J., Walsh, Calum J., Moore, Rebecca L., Killeen, Sarah Louise, Geraghty, Aisling A., Lawton, Elaine M., Byrne, David, Sanchez-Gallardo, Rocio, Nori, Sai Ravi Chandra, Nielsen, Ida Busch, Wortmann, Esther, Matthews, Elizabeth, O’Flaherty, Roisin, Rudd, Pauline M., Groeger, David, Shanahan, Fergus, Saldova, Radka, McAuliffe, Fionnuala M., Van Sinderen, Douwe, Cotter, Paul D.
Publicado 2023