Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients

por Wandro, Stephen, Carmody, Lisa, Gallagher, Tara, LiPuma, John J., Whiteson, Katrine
Publicado 2017

The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis

por Wandro, Stephen, Osborne, Stephanie, Enriquez, Claudia, Bixby, Christine, Arrieta, Antonio, Whiteson, Katrine
Publicado 2018

Predictable Molecular Adaptation of Coevolving Enterococcus faecium and Lytic Phage EfV12-phi1

por Wandro, Stephen, Oliver, Andrew, Gallagher, Tara, Weihe, Claudia, England, Whitney, Martiny, Jennifer B. H., Whiteson, Katrine
Publicado 2019

Phage Cocktails Constrain the Growth of Enterococcus

por Wandro, Stephen, Ghatbale, Pooja, Attai, Hedieh, Hendrickson, Clark, Samillano, Cyril, Suh, Joy, Dunham, Sage J. B., Pride, David T., Whiteson, Katrine
Publicado 2022

Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH

por Gallagher, Tara, Phan, Joann, Oliver, Andrew, Chase, Alexander B., England, Whitney E., Wandro, Stephen, Hendrickson, Clark, Riedel, Stefan F., Whiteson, Katrine
Publicado 2019

Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition

por Marotz, Clarisse, Cavagnero, Kellen J., Song, Se Jin, McDonald, Daniel, Wandro, Stephen, Humphrey, Greg, Bryant, MacKenzie, Ackermann, Gail, Diaz, Edgar, Knight, Rob
Publicado 2021

Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References

por Hakim, Daniel, Wandro, Stephen, Zengler, Karsten, Zaramela, Livia S., Nowinski, Brent, Swafford, Austin, Zhu, Qiyun, Song, Se Jin, Gonzalez, Antonio, McDonald, Daniel, Knight, Rob
Publicado 2022

Class Ib MHC–Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine

por Dasgupta, Suryasarathi, Maricic, Igor, Tang, Jay, Wandro, Stephen, Weldon, Kelly, Carpenter, Carolina S., Eckmann, Lars, Rivera-Nieves, Jesus, Sandborn, William, Knight, Rob, Dorrestein, Peter, Swafford, Austin D., Kumar, Vipin
Publicado 2021

Dosing and Re-Administration of Lentiviral Vector for In Vivo Gene Therapy in Rhesus Monkeys and ADA-Deficient Mice

por Carbonaro-Sarracino, Denise A., Tarantal, Alice F., Lee, C. Chang I., Kaufman, Michael L., Wandro, Stephen, Jin, Xiangyang, Martinez, Michele, Clark, Danielle N., Chun, Krista, Koziol, Colin, Hardee, Cinnamon L., Wang, Xiaoyan, Kohn, Donald B.
Publicado 2019

Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy

por Oliver, Andrew, LaMere, Brandon, Weihe, Claudia, Wandro, Stephen, Lindsay, Karen L., Wadhwa, Pathik D., Mills, David A., Pride, David T., Fiehn, Oliver, Northen, Trent, de Raad, Markus, Li, Huiying, Martiny, Jennifer B. H., Lynch, Susan, Whiteson, Katrine
Publicado 2020

Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome

por Taylor, Bryn C., Sheikh Andalibi, Mohammadsobhan, Wandro, Stephen, Weldon, Kelly C., Sepich-Poore, Gregory D., Carpenter, Carolina S., Fraraccio, Serena, Franklin, Donald, Iudicello, Jennifer E., Letendre, Scott, Gianella, Sara, Grant, Igor, Ellis, Ronald J., Heaton, Robert K., Knight, Rob, Swafford, Austin D.
Publicado 2023

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P., Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A., Carpenter, Carolina S., Zaramela, Livia S., Minich, Jeremiah J., Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D., Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2020

A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities

por Shaffer, Justin P, Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A, Carpenter, Carolina S, Zaramela, Livia S, Minich, Jeremiah J, Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D, Miller-Montgomery, Sandrine, Knight, Rob
Publicado 2021

Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases

por Armstrong, George, Martino, Cameron, Morris, Justin, Khaleghi, Behnam, Kang, Jaeyoung, DeReus, Jeff, Zhu, Qiyun, Roush, Daniel, McDonald, Daniel, Gonazlez, Antonio, Shaffer, Justin P., Carpenter, Carolina, Estaki, Mehrbod, Wandro, Stephen, Eilert, Sean, Akel, Ameen, Eno, Justin, Curewitz, Ken, Swafford, Austin D., Moshiri, Niema, Rosing, Tajana, Knight, Rob
Publicado 2022

Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions

por Narunsky-Haziza, Lian, Sepich-Poore, Gregory D., Livyatan, Ilana, Asraf, Omer, Martino, Cameron, Nejman, Deborah, Gavert, Nancy, Stajich, Jason E., Amit, Guy, González, Antonio, Wandro, Stephen, Perry, Gili, Ariel, Ruthie, Meltser, Arnon, Shaffer, Justin P., Zhu, Qiyun, Balint-Lahat, Nora, Barshack, Iris, Dadiani, Maya, Gal-Yam, Einav N., Patel, Sandip Pravin, Bashan, Amir, Swafford, Austin D., Pilpel, Yitzhak, Knight, Rob, Straussman, Ravid
Publicado 2022