Benchmarking gene ontology function predictions using negative annotations

por Warwick Vesztrocy, Alex, Dessimoz, Christophe
Publicado 2020

Prioritising candidate genes causing QTL using hierarchical orthologous groups

por Warwick Vesztrocy, Alex, Dessimoz, Christophe, Redestig, Henning
Publicado 2018

OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches

por Rossier, Victor, Warwick Vesztrocy, Alex, Robinson-Rechavi, Marc, Dessimoz, Christophe
Publicado 2021

OMA standalone: orthology inference among public and custom genomes and transcriptomes

por Altenhoff, Adrian M., Levy, Jeremy, Zarowiecki, Magdalena, Tomiczek, Bartłomiej, Warwick Vesztrocy, Alex, Dalquen, Daniel A., Müller, Steven, Telford, Maximilian J., Glover, Natasha M., Dylus, David, Dessimoz, Christophe
Publicado 2019

GOATOOLS: A Python library for Gene Ontology analyses

por Klopfenstein, D. V., Zhang, Liangsheng, Pedersen, Brent S., Ramírez, Fidel, Warwick Vesztrocy, Alex, Naldi, Aurélien, Mungall, Christopher J., Yunes, Jeffrey M., Botvinnik, Olga, Weigel, Mark, Dampier, Will, Dessimoz, Christophe, Flick, Patrick, Tang, Haibao
Publicado 2018

OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more

por Altenhoff, Adrian M, Train, Clément-Marie, Gilbert, Kimberly J, Mediratta, Ishita, Mendes de Farias, Tarcisio, Moi, David, Nevers, Yannis, Radoykova, Hale-Seda, Rossier, Victor, Warwick Vesztrocy, Alex, Glover, Natasha M, Dessimoz, Christophe
Publicado 2020

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces

por Altenhoff, Adrian M, Glover, Natasha M, Train, Clément-Marie, Kaleb, Klara, Warwick Vesztrocy, Alex, Dylus, David, de Farias, Tarcisio M, Zile, Karina, Stevenson, Charles, Long, Jiao, Redestig, Henning, Gonnet, Gaston H, Dessimoz, Christophe
Publicado 2018

New genome assembly of the barn owl (Tyto alba alba)

por Ducrest, Anne‐Lyse, Neuenschwander, Samuel, Schmid‐Siegert, Emanuel, Pagni, Marco, Train, Clément, Dylus, David, Nevers, Yannis, Warwick Vesztrocy, Alex, San‐Jose, Luis M., Dupasquier, Mélanie, Dessimoz, Christophe, Xenarios, Ioannis, Roulin, Alexandre, Goudet, Jérôme
Publicado 2020

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

por Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R., Lee, Alexandra J., Kacsoh, Balint Z., Crocker, Alex W., Lewis, Kimberley A., Georghiou, George, Nguyen, Huy N., Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S., Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L., Freddolino, Peter L., Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M., Gemovic, Branislava, Perovic, Vladimir R., Davidović, Radoslav S., Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad R.K., Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C., Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A., Antczak, Magdalena, Fabris, Fabio, Wass, Mark N., Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E., Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J., Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W., Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T., Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L., Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B., Reeb, Jonas, Ritchie, David W., Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico, Falda, Marco, Berselli, Michele, Tosatto, Silvio C.E., Carraro, Marco, Piovesan, Damiano, Ur Rehman, Hafeez, Mao, Qizhong, Zhang, Shanshan, Vucetic, Slobodan, Black, Gage S., Jo, Dane, Suh, Erica, Dayton, Jonathan B., Larsen, Dallas J., Omdahl, Ashton R., McGuffin, Liam J., Brackenridge, Danielle A., Babbitt, Patricia C., Yunes, Jeffrey M., Fontana, Paolo, Zhang, Feng, Zhu, Shanfeng, You, Ronghui, Zhang, Zihan, Dai, Suyang, Yao, Shuwei, Tian, Weidong, Cao, Renzhi, Chandler, Caleb, Amezola, Miguel, Johnson, Devon, Chang, Jia-Ming, Liao, Wen-Hung, Liu, Yi-Wei, Pascarelli, Stefano, Frank, Yotam, Hoehndorf, Robert, Kulmanov, Maxat, Boudellioua, Imane, Politano, Gianfranco, Di Carlo, Stefano, Benso, Alfredo, Hakala, Kai, Ginter, Filip, Mehryary, Farrokh, Kaewphan, Suwisa, Björne, Jari, Moen, Hans, Tolvanen, Martti E.E., Salakoski, Tapio, Kihara, Daisuke, Jain, Aashish, Šmuc, Tomislav, Altenhoff, Adrian, Ben-Hur, Asa, Rost, Burkhard, Brenner, Steven E., Orengo, Christine A., Jeffery, Constance J., Bosco, Giovanni, Hogan, Deborah A., Martin, Maria J., O’Donovan, Claire, Mooney, Sean D., Greene, Casey S., Radivojac, Predrag, Friedberg, Iddo
Publicado 2019