Influenza-Omics and the Host Response: Recent Advances and Future Prospects

por Powell, Joshua D., Waters, Katrina M.
Publicado 2017

3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism

por McClure, Ryan S., Rericha, Yvonne, Waters, Katrina M., Tanguay, Robyn L.
Publicado 2023

Gene co-expression network analysis in zebrafish reveals chemical class specific modules

por Shankar, Prarthana, McClure, Ryan S., Waters, Katrina M., Tanguay, Robyn L.
Publicado 2021

ERK Oscillation-Dependent Gene Expression Patterns and Deregulation by Stress Response

por Waters, Katrina M., Cummings, Brian S., Shankaran, Harish, Scholpa, Natalie E., Weber, Thomas J.
Publicado 2014

Genetic and Epigenetic Changes in Chromosomally Stable and Unstable Progeny of Irradiated Cells

por Baulch, Janet E., Aypar, Umut, Waters, Katrina M., Yang, Austin J., Morgan, William F.
Publicado 2014

Quantitative Proteomic Profiling of Low-Dose Ionizing Radiation Effects in a Human Skin Model

por Hengel, Shawna M., Aldrich, Joshua T., Waters, Katrina M., Pasa-Tolic, Ljiljana, Stenoien, David L.
Publicado 2014

Concentration-response gene expression analysis in zebrafish reveals phenotypically-anchored transcriptional responses to retene

por Wilson, Lindsay B., McClure, Ryan S., Waters, Katrina M., Simonich, Michael T., Tanguay, Robyn L.
Publicado 2022

Controlling the Response: Predictive Modeling of a Highly Central, Pathogen-Targeted Core Response Module in Macrophage Activation

por McDermott, Jason E., Archuleta, Michelle, Thrall, Brian D., Adkins, Joshua N., Waters, Katrina M.
Publicado 2011

Coupling Environmental Whole Mixture Toxicity Screening with Unbiased RNA-Seq Reveals Site-Specific Biological Responses in Zebrafish

por Rude, Christian I., Tidwell, Lane G., Tilton, Susan C., Waters, Katrina M., Anderson, Kim A., Tanguay, Robyn L.
Publicado 2023

Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis

por McDermott, Jason E, Diamond, Deborah L, Corley, Courtney, Rasmussen, Angela L, Katze, Michael G, Waters, Katrina M
Publicado 2012

Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard

por Shankar, Prarthana, Geier, Mitra C., Truong, Lisa, McClure, Ryan S., Pande, Paritosh, Waters, Katrina M., Tanguay, Robert L.
Publicado 2019

AHR2 Mutant Reveals Functional Diversity of Aryl Hydrocarbon Receptors in Zebrafish

por Goodale, Britton C., La Du, Jane K., Bisson, William H., Janszen, Derek B., Waters, Katrina M., Tanguay, Robert L.
Publicado 2012

Expanding the access of wearable silicone wristbands in community-engaged research through best practices in data analysis and integration

por Bramer, Lisa M., Dixon, Holly M., Degnan, David J., Rohlman, Diana, Herbstman, Julie B., Anderson, Kim A., Waters, Katrina M.
Publicado 2023

Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools

por Tilton, Susan C, Tal, Tamara L, Scroggins, Sheena M, Franzosa, Jill A, Peterson, Elena S, Tanguay, Robert L, Waters, Katrina M
Publicado 2012

Missing data in multi-omics integration: Recent advances through artificial intelligence

por Flores, Javier E., Claborne, Daniel M., Weller, Zachary D., Webb-Robertson, Bobbie-Jo M., Waters, Katrina M., Bramer, Lisa M.
Publicado 2023

Relative Influence of Trans-Pacific and Regional Atmospheric Transport of PAHs in the Pacific Northwest, U.S.

por Lafontaine, Scott, Schrlau, Jill, Butler, Jack, Jia, Yuling, Harper, Barbara, Harris, Stuart, Bramer, Lisa M., Waters, Katrina M., Harding, Anna, Simonich, Staci L. Massey
Publicado 2015

Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration

por Brown, Joseph, Phillips, Aaron R., Lewis, David A., Mans, Michael-Andres, Chang, Yvonne, Tanguay, Robert L., Peterson, Elena S., Waters, Katrina M., Tilton, Susan C.
Publicado 2019

Improved quality control processing of peptide-centric LC-MS proteomics data

por Matzke, Melissa M., Waters, Katrina M., Metz, Thomas O., Jacobs, Jon M., Sims, Amy C., Baric, Ralph S., Pounds, Joel G., Webb-Robertson, Bobbie-Jo M.
Publicado 2011

Combined Statistical Analyses of Peptide Intensities and Peptide Occurrences Improves Identification of Significant Peptides from MS-Based Proteomics Data

por Webb-Robertson, Bobbie-Jo M., McCue, Lee Ann, Waters, Katrina M., Matzke, Melissa M., Jacobs, Jon M., Metz, Thomas O., Varnum, Susan M., Pounds, Joel G.
Publicado 2010

Unified feature association networks through integration of transcriptomic and proteomic data

por McClure, Ryan S., Wendler, Jason P., Adkins, Joshua N., Swanstrom, Jesica, Baric, Ralph, Kaiser, Brooke L. Deatherage, Oxford, Kristie L., Waters, Katrina M., McDermott, Jason E.
Publicado 2019