Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems

por Imchen, Madangchanok, Kumavath, Ranjith, Barh, Debmalya, Azevedo, Vasco, Ghosh, Preetam, Viana, Marcus, Wattam, Alice R.
Publicado 2017

Author Correction: Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems

por Imchen, Madangchanok, Kumavath, Ranjith, Barh, Debmalya, Azevedo, Vasco, Ghosh, Preetam, Viana, Marcus, Wattam, Alice R.
Publicado 2018

Isolation of Brucella inopinata from a White’s tree frog (Litoria caerulea): pose exotic frogs a potential risk to human health?

por Scholz, Holger C., Heckers, Kim O., Appelt, Sandra, Geier-Dömling, Dorothee, Schlegel, Patrick, Wattam, Alice R.
Publicado 2023

Identification and molecular epidemiology of methicillin resistant Staphylococcus pseudintermedius strains isolated from canine clinical samples in Argentina

por Gagetti, Paula, Wattam, Alice R., Giacoboni, Gabriela, De Paulis, Adriana, Bertona, Eugenia, Corso, Alejandra, Rosato, Adriana E.
Publicado 2019

Curation, integration and visualization of bacterial virulence factors in PATRIC

por Mao, Chunhong, Abraham, David, Wattam, Alice R., Wilson, Meredith J.C., Shukla, Maulik, Yoo, Hyun Seung, Sobral, Bruno W.
Publicado 2015

Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems

por Imchen, Madangchanok, Kumavath, Ranjith, Barh, Debmalya, Vaz, Aline, Góes-Neto, Aristóteles, Tiwari, Sandeep, Ghosh, Preetam, Wattam, Alice R., Azevedo, Vasco
Publicado 2018

PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database

por Davis, James J., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Pusch, Gordon D., Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R., Yoo, Hyunseung
Publicado 2016

Antimicrobial Resistance Prediction in PATRIC and RAST

por Davis, James J., Boisvert, Sébastien, Brettin, Thomas, Kenyon, Ronald W., Mao, Chunhong, Olson, Robert, Overbeek, Ross, Santerre, John, Shukla, Maulik, Wattam, Alice R., Will, Rebecca, Xia, Fangfang, Stevens, Rick
Publicado 2016

Enabling comparative modeling of closely related genomes: example genus Brucella

por Faria, José P., Edirisinghe, Janaka N., Davis, James J., Disz, Terrence, Hausmann, Anna, Henry, Christopher S., Olson, Robert, Overbeek, Ross A., Pusch, Gordon D., Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R.
Publicado 2014

Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo

por Viana, Marcus Vinicius Canário, Figueiredo, Henrique, Ramos, Rommel, Guimarães, Luis Carlos, Pereira, Felipe Luiz, Dorella, Fernanda Alves, Selim, Salah Abdel Karim, Salaheldean, Mohammad, Silva, Artur, Wattam, Alice R., Azevedo, Vasco
Publicado 2017

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

por Overbeek, Ross, Olson, Robert, Pusch, Gordon D., Olsen, Gary J., Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Parrello, Bruce, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang, Stevens, Rick
Publicado 2014

Insight of Genus Corynebacterium: Ascertaining the Role of Pathogenic and Non-pathogenic Species

por Oliveira, Alberto, Oliveira, Leticia C., Aburjaile, Flavia, Benevides, Leandro, Tiwari, Sandeep, Jamal, Syed B., Silva, Arthur, Figueiredo, Henrique C. P., Ghosh, Preetam, Portela, Ricardo W., De Carvalho Azevedo, Vasco A., Wattam, Alice R.
Publicado 2017

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

por Brettin, Thomas, Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Thomason, James A., Stevens, Rick, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang
Publicado 2015

The Complete Genome Sequence of the Emerging Pathogen Mycobacterium haemophilum Explains Its Unique Culture Requirements

por Tufariello, JoAnn M., Kerantzas, Christopher A., Vilchèze, Catherine, Calder, R. Brent, Nordberg, Eric K., Fischer, Jack A., Hartman, Travis E., Yang, Eva, Driscoll, Timothy, Cole, Laura E., Sebra, Robert, Maqbool, Shahina B., Wattam, Alice R., Jacobs, William R.
Publicado 2015

Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts

por Al Dahouk, Sascha, Köhler, Stephan, Occhialini, Alessandra, Jiménez de Bagüés, María Pilar, Hammerl, Jens Andre, Eisenberg, Tobias, Vergnaud, Gilles, Cloeckaert, Axel, Zygmunt, Michel S., Whatmore, Adrian M., Melzer, Falk, Drees, Kevin P., Foster, Jeffrey T., Wattam, Alice R., Scholz, Holger C.
Publicado 2017

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research

por Warren, Andrew S., Aurrecoechea, Cristina, Brunk, Brian, Desai, Prerak, Emrich, Scott, Giraldo-Calderón, Gloria I., Harb, Omar, Hix, Deborah, Lawson, Daniel, Machi, Dustin, Mao, Chunhong, McClelland, Michael, Nordberg, Eric, Shukla, Maulik, Vosshall, Leslie B., Wattam, Alice R., Will, Rebecca, Yoo, Hyun Seung, Sobral, Bruno
Publicado 2015

Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway

por Wattam, Alice R., Inzana, Thomas J., Williams, Kelly P., Mane, Shrinivasrao P., Shukla, Maulik, Almeida, Nalvo F., Dickerman, Allan W., Mason, Steven, Moriyón, Ignacio, O’Callaghan, David, Whatmore, Adrian M., Sobral, Bruno W., Tiller, Rebekah V., Hoffmaster, Alex R., Frace, Michael A., De Castro, Cristina, Molinaro, Antonio, Boyle, Stephen M., De, Barun K., Setubal, João C.
Publicado 2012

Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway

por Wattam, Alice R., Inzana, Thomas J., Williams, Kelly P., Mane, Shrinivasrao P., Shukla, Maulik, Almeida, Nalvo F., Dickerman, Allan W., Mason, Steven, Moriyón, Ignacio, O'Callaghan, David, Whatmore, Adrian M., Sobral, Bruno W., Tiller, Rebekah V., Hoffmaster, Alex R., Frace, Michael A., De Castro, Cristina, Molinaro, Antonio, Boyle, Stephen M., De, Barun K., Setubal, João C.
Publicado 2012

PATRIC, the bacterial bioinformatics database and analysis resource

por Wattam, Alice R., Abraham, David, Dalay, Oral, Disz, Terry L., Driscoll, Timothy, Gabbard, Joseph L., Gillespie, Joseph J., Gough, Roger, Hix, Deborah, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K., Olson, Robert, Overbeek, Ross, Pusch, Gordon D., Shukla, Maulik, Schulman, Julie, Stevens, Rick L., Sullivan, Daniel E., Vonstein, Veronika, Warren, Andrew, Will, Rebecca, Wilson, Meredith J.C., Yoo, Hyun Seung, Zhang, Chengdong, Zhang, Yan, Sobral, Bruno W.
Publicado 2014

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

por Wattam, Alice R., Davis, James J., Assaf, Rida, Boisvert, Sébastien, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Dietrich, Emily M., Disz, Terry, Gabbard, Joseph L., Gerdes, Svetlana, Henry, Christopher S., Kenyon, Ronald W., Machi, Dustin, Mao, Chunhong, Nordberg, Eric K., Olsen, Gary J., Murphy-Olson, Daniel E., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Vonstein, Veronika, Warren, Andrew, Xia, Fangfang, Yoo, Hyunseung, Stevens, Rick L.
Publicado 2017