MEDEA: analysis of transcription factor binding motifs in accessible chromatin

por Mariani, Luca, Weinand, Kathryn, Gisselbrecht, Stephen S., Bulyk, Martha L.
Publicado 2020

Maximizing statistical power to detect differentially abundant cell states with scPOST

por Millard, Nghia, Korsunsky, Ilya, Weinand, Kathryn, Fonseka, Chamith Y., Nathan, Aparna, Kang, Joyce B., Raychaudhuri, Soumya
Publicado 2021

Efficient and precise single-cell reference atlas mapping with Symphony

por Kang, Joyce B., Nathan, Aparna, Weinand, Kathryn, Zhang, Fan, Millard, Nghia, Rumker, Laurie, Moody, D. Branch, Korsunsky, Ilya, Raychaudhuri, Soumya
Publicado 2021

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

por Shokri, Leila, Inukai, Sachi, Hafner, Antonina, Weinand, Kathryn, Hens, Korneel, Vedenko, Anastasia, Gisselbrecht, Stephen S., Dainese, Riccardo, Bischof, Johannes, Furger, Edy, Feuz, Jean-Daniel, Basler, Konrad, Deplancke, Bart, Bulyk, Martha L.
Publicado 2019

Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements

por Ibarra, Ignacio L, Ratnu, Vikram S, Gordillo, Lucia, Hwang, In‐Young, Mariani, Luca, Weinand, Kathryn, Hammarén, Henrik M, Heck, Jennifer, Bulyk, Martha L, Savitski, Mikhail M, Zaugg, Judith B, Noh, Kyung‐Min
Publicado 2022

The Chromatin Landscape of Pathogenic Transcriptional Cell States in Rheumatoid Arthritis

por Weinand, Kathryn, Sakaue, Saori, Nathan, Aparna, Jonsson, Anna Helena, Zhang, Fan, Watts, Gerald F. M., Zhu, Zhu, Rao, Deepak A., Anolik, Jennifer H., Brenner, Michael B., Donlin, Laura T., Wei, Kevin, Raychaudhuri, Soumya
Publicado 2023

Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes

por Zhang, Fan, Jonsson, Anna Helena, Nathan, Aparna, Millard, Nghia, Curtis, Michelle, Xiao, Qian, Gutierrez-Arcelus, Maria, Apruzzese, William, Watts, Gerald F. M., Weisenfeld, Dana, Nayar, Saba, Rangel-Moreno, Javier, Meednu, Nida, Marks, Kathryne E., Mantel, Ian, Kang, Joyce B., Rumker, Laurie, Mears, Joseph, Slowikowski, Kamil, Weinand, Kathryn, Orange, Dana E., Geraldino-Pardilla, Laura, Deane, Kevin D., Tabechian, Darren, Ceponis, Arnoldas, Firestein, Gary S., Maybury, Mark, Sahbudin, Ilfita, Ben-Artzi, Ami, Mandelin, Arthur M., Nerviani, Alessandra, Lewis, Myles J., Rivellese, Felice, Pitzalis, Costantino, Hughes, Laura B., Horowitz, Diane, DiCarlo, Edward, Gravallese, Ellen M., Boyce, Brendan F., Moreland, Larry W., Goodman, Susan M., Perlman, Harris, Holers, V. Michael, Liao, Katherine P., Filer, Andrew, Bykerk, Vivian P., Wei, Kevin, Rao, Deepak A., Donlin, Laura T., Anolik, Jennifer H., Brenner, Michael B., Raychaudhuri, Soumya
Publicado 2023