Dramatic changes in transcription factor binding over evolutionary time

por Weirauch, Matthew T, Hughes, Timothy R
Publicado 2010

Quantifying Inter-Laboratory Variability in Stable Isotope Analysis of Ancient Skeletal Remains

por Pestle, William J., Crowley, Brooke E., Weirauch, Matthew T.
Publicado 2014

Runx Transcription Factors in T Cells—What Is Beyond Thymic Development?

por Korinfskaya, Svetlana, Parameswaran, Sreeja, Weirauch, Matthew T., Barski, Artem
Publicado 2021

VExD: a curated resource for human gene expression alterations following viral infection

por Dexheimer, Phillip J, Pujato, Mario, Roskin, Krishna M, Weirauch, Matthew T
Publicado 2023

Information-based methods for predicting gene function from systematic gene knock-downs

por Weirauch, Matthew T, Wong, Christopher K, Byrne, Alexandra B, Stuart, Joshua M
Publicado 2008

Degenerate Pax2 and Senseless binding motifs improve detection of low-affinity sites required for enhancer specificity

por Zandvakili, Arya, Campbell, Ian, Gutzwiller, Lisa M., Weirauch, Matthew T., Gebelein, Brian
Publicado 2018

A search engine to identify pathway genes from expression data on multiple organisms

por Chen, Chunnuan, Weirauch, Matthew T, Powell, Corey C, Zambon, Alexander C, Stuart, Joshua M
Publicado 2007

GABPα Binding to Overlapping ETS and CRE DNA Motifs Is Enhanced by CREB1: Custom DNA Microarrays

por He, Ximiao, Syed, Khund Sayeed, Tillo, Desiree, Mann, Ishminder, Weirauch, Matthew T., Vinson, Charles
Publicado 2015

Affinity regression predicts the recognition code of nucleic acid binding proteins

por Pelossof, Raphael, Singh, Irtisha, Yang, Julie L., Weirauch, Matthew T., Hughes, Timothy R., Leslie, Christina S.
Publicado 2015

Frontotemporal degeneration genetic risk loci and transcription regulation as a possible mechanistic link to disease risk

por Sawyer, Russell P., Stone, Hillarey K., Salim, Hanan, Lu, Xiaoming, Weirauch, Matthew T., Kottyan, Leah
Publicado 2022

NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule

por Fu, Hailu, Zheng, Haizi, Chen, Xiaoting, Weirauch, Matthew T., Muglia, Louis J., Wang, Li, Liu, Yaping
Publicado 2023

PARP1 activation increases expression of modified tumor suppressors and pathways underlying development of aggressive hepatoblastoma

por Valanejad, Leila, Cast, Ashley, Wright, Mary, Bissig, Karl-Dimiter, Karns, Rebekah, Weirauch, Matthew T., Timchenko, Nikolai
Publicado 2018

AP-1 activity induced by co-stimulation is required for chromatin opening during T cell activation

por Yukawa, Masashi, Jagannathan, Sajjeev, Vallabh, Sushmitha, Kartashov, Andrey V., Chen, Xiaoting, Weirauch, Matthew T., Barski, Artem
Publicado 2019

CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo

por Mann, Ishminder K., Chatterjee, Raghunath, Zhao, Jianfei, He, Ximiao, Weirauch, Matthew T., Hughes, Timothy R., Vinson, Charles
Publicado 2013

Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding

por Najafabadi, Hamed S., Garton, Michael, Weirauch, Matthew T., Mnaimneh, Sanie, Yang, Ally, Kim, Philip M., Hughes, Timothy R.
Publicado 2017

Diesel exhaust and house dust mite allergen lead to common changes in the airway methylome and hydroxymethylome

por Zhang, Xue, Chen, Xiaoting, Weirauch, Matthew T, Zhang, Xiang, Burleson, J D, Brandt, Eric B, Ji, Hong
Publicado 2018

Human Virus Transcriptional Regulators

por Liu, Xing, Hong, Ted, Parameswaran, Sreeja, Ernst, Kevin, Marazzi, Ivan, Weirauch, Matthew T., Fuxman Bass, Juan I.
Publicado 2020

Gene–environment interactions and their impact on human health

por Virolainen, Samuel J., VonHandorf, Andrew, Viel, Kenyatta C. M. F., Weirauch, Matthew T., Kottyan, Leah C.
Publicado 2022

Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data

por Cain, Brittany, Webb, Jordan, Yuan, Zhenyu, Cheung, David, Lim, Hee-Woong, Kovall, Rhett A, Weirauch, Matthew T, Gebelein, Brian
Publicado 2023

A global analysis of genetic interactions in Caenorhabditis elegans

por Byrne, Alexandra B, Weirauch, Matthew T, Wong, Victoria, Koeva, Martina, Dixon, Scott J, Stuart, Joshua M, Roy, Peter J
Publicado 2007