Characteristics and Validation Techniques for PCA-Based Gene-Expression Signatures

por Berglund, Anders E., Welsh, Eric A., Eschrich, Steven A.
Publicado 2017

Iterative rank-order normalization of gene expression microarray data

por Welsh, Eric A, Eschrich, Steven A, Berglund, Anders E, Fenstermacher, David A
Publicado 2013

Escape Excel: A tool for preventing gene symbol and accession conversion errors

por Welsh, Eric A., Stewart, Paul A., Kuenzi, Brent M., Eschrich, James A.
Publicado 2017

Evaluating somatic tumor mutation detection without matched normal samples

por Teer, Jamie K., Zhang, Yonghong, Chen, Lu, Welsh, Eric A., Cress, W. Douglas, Eschrich, Steven A., Berglund, Anders E.
Publicado 2017

Overexpression of major CDKN3 transcripts is associated with poor survival in lung adenocarcinoma

por Fan, Chao, Chen, Lu, Huang, Qingling, Shen, Tao, Welsh, Eric A, Teer, Jamie K, Cai, Jianfeng, Cress, W Douglas, Wu, Jie
Publicado 2015

Multi-Omics and Informatics Analysis of FFPE Tissues Derived from Melanoma Patients with Long/Short Responses to Anti-PD1 Therapy Reveals Pathways of Response

por Garg, Saurabh K., Welsh, Eric A., Fang, Bin, Hernandez, Yuliana I., Rose, Trevor, Gray, Jhanelle, Koomen, John M., Berglund, Anders, Mulé, James J., Markowitz, Joseph
Publicado 2020

Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer

por Kim, Jae-Young, Stewart, Paul A., Borne, Adam L., Fang, Bin, Welsh, Eric A., Chen, Yian Ann, Eschrich, Steven A., Koomen, John M., Haura, Eric B.
Publicado 2016

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma

por Stewart, Paul A., Parapatics, Katja, Welsh, Eric A., Müller, André C., Cao, Haoyun, Fang, Bin, Koomen, John M., Eschrich, Steven A., Bennett, Keiryn L., Haura, Eric B.
Publicado 2015

Transforming growth factor β-induced epithelial-to-mesenchymal signature predicts metastasis-free survival in non-small cell lung cancer

por Gordian, Edna, Welsh, Eric A., Gimbrone, Nicholas, Siegel, Erin M., Shibata, David, Creelan, Ben C., Cress, William Douglas, Eschrich, Steven A., Haura, Eric B., Muñoz-Antonia, Teresita
Publicado 2019

Correction: Transforming growth factor β-induced epithelial-to-mesenchymal signature predicts metastasis-free survival in non-small cell lung cancer

por Gordian, Edna, Welsh, Eric A., Gimbrone, Nicholas, Siegel, Erin M., Shibata, David, Creelan, Ben C., Cress, William Douglas, Eschrich, Steven A., Haura, Eric B., Muñoz-Antonia, Teresita
Publicado 2021

Drepmel—A Multi-Omics Melanoma Drug Repurposing Resource for Prioritizing Drug Combinations and Understanding Tumor Microenvironment

por Thompson, Zachary J., Teer, Jamie K., Li, Jiannong, Chen, Zhihua, Welsh, Eric A., Zhang, Yonghong, Ayoubi, Noura, Eroglu, Zeynep, Tan, Aik Choon, Smalley, Keiran S. M., Chen, Yian Ann
Publicado 2022

Integrated proteomics identifies PARP inhibitor-induced prosurvival signaling changes as potential vulnerabilities in ovarian cancer

por Deng, Ou, Dash, Sweta, Nepomuceno, Thales C., Fang, Bin, Yun, Sang Y., Welsh, Eric A., Lawrence, Harshani R., Marchion, Douglas, Koomen, John M., Monteiro, Alvaro N., Rix, Uwe
Publicado 2022

Cell-surface marker discovery for lung cancer

por Cohen, Allison S., Khalil, Farah K., Welsh, Eric A., Schabath, Matthew B., Enkemann, Steven A., Davis, Andrea, Zhou, Jun-Min, Boulware, David C., Kim, Jongphil, Haura, Eric B., Morse, David L.
Publicado 2017

Metabolomics of primary cutaneous melanoma and matched adjacent extratumoral microenvironment

por Taylor, Nicholas J., Gaynanova, Irina, Eschrich, Steven A., Welsh, Eric A., Garrett, Timothy J., Beecher, Chris, Sharma, Ritin, Koomen, John M., Smalley, Keiran S. M., Messina, Jane L., Kanetsky, Peter A.
Publicado 2020

Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142

por Stöckel, Jana, Jacobs, Jon M., Elvitigala, Thanura R., Liberton, Michelle, Welsh, Eric A., Polpitiya, Ashoka D., Gritsenko, Marina A., Nicora, Carrie D., Koppenaal, David W., Smith, Richard D., Pakrasi, Himadri B.
Publicado 2011

TCR-Independent Metabolic Reprogramming Precedes Lymphoma-Driven Changes in T-cell Fate

por Hesterberg, Rebecca S., Liu, Min, Elmarsafawi, Aya G., Koomen, John M., Welsh, Eric A., Hesterberg, Stephen G., Ranatunga, Sujeewa, Yang, Chunying, Li, Weimin, Lawrence, Harshani R., Rodriguez, Paulo C., Berglund, Anders E., Cleveland, John L.
Publicado 2022

Multiplex transcriptional analysis of paraffin-embedded liver needle biopsy from patients with liver fibrosis

por Staten, Nicholas R, Welsh, Eric A, Sidik, Kurex, McDonald, Sandra A, Dufield, Dawn R, Maqsodi, Botoul, Ma, Yunqing, McMaster, Gary K, Mathews, Rodney W, Arch, Robert H, Masferrer, Jaime L, Souberbielle, Bernard E
Publicado 2012

Genomic identification of sarcoma radiosensitivity and the clinical implications for radiation dose personalization

por Yang, George, Yuan, Zhigang, Ahmed, Kamran, Welsh, Eric A., Fulp, William J., Gonzalez, Ricardo J., Mullinax, John E., Letson, Douglas, Bui, Marilyn, Harrison, Louis B., Scott, Jacob G., Torres-Roca, Javier F., Naghavi, Arash O.
Publicado 2021

Differential association of STK11 and TP53 with KRAS mutation-associated gene expression, proliferation and immune surveillance in lung adenocarcinoma

por Schabath, Matthew B., Welsh, Eric A., Fulp, William J., Chen, Lu, Teer, Jamie K., Thompson, Zachary J., Engel, Brienne E., Xie, Mengyu, Berglund, Anders E., Creelan, Ben C., Antonia, Scott J., Gray, Jhanelle E., Eschrich, Steven, Chen, Dung-Tsa, Cress, W. Douglas, Haura, Eric B., Beg, Amer A.
Publicado 2015

Early2 factor (E2F) deregulation is a prognostic and predictive biomarker in lung adenocarcinoma

por Chen, Lu, Kurtyka, Courtney A, Welsh, Eric A, Rivera, Jason I, Engel, Brienne E, Muñoz-Antonia, Teresita, Yoder, Sean J, Eschrich, Steven A, Creelan, Ben C, Chiappori, Alberto A, Gray, Jhanelle E, Ramirez, Jose Luis, Rosell, Rafael, Schabath, Matthew B, Haura, Eric B, Chen, Dung-Tsa, Cress, Douglas W
Publicado 2016