Assessment of human diploid genome assembly with 10x Linked-Reads data

por Zhang, Lu, Zhou, Xin, Weng, Ziming, Sidow, Arend
Publicado 2019

De novo diploid genome assembly for genome-wide structural variant detection

por Zhang, Lu, Zhou, Xin, Weng, Ziming, Sidow, Arend
Publicado 2019

Aquila enables reference-assisted diploid personal genome assembly and comprehensive variant detection based on linked reads

por Zhou, Xin, Zhang, Lu, Weng, Ziming, Dill, David L., Sidow, Arend
Publicado 2021

Comprehensive genomic characterization of breast tumors with BRCA1 and BRCA2 mutations

por Lal, Avantika, Ramazzotti, Daniele, Weng, Ziming, Liu, Keli, Ford, James M., Sidow, Arend
Publicado 2019

Persistent Infection and Promiscuous Recombination of Multiple Genotypes of an RNA Virus within a Single Host Generate Extensive Diversity

por Weng, Ziming, Barthelson, Roger, Gowda, Siddarame, Hilf, Mark E., Dawson, William O., Galbraith, David W., Xiong, Zhongguo
Publicado 2007

Discovery of recurrent structural variants in nasopharyngeal carcinoma

por Valouev, Anton, Weng, Ziming, Sweeney, Robert T., Varma, Sushama, Le, Quynh-Thu, Kong, Christina, Sidow, Arend, West, Robert B.
Publicado 2014

Read clouds uncover variation in complex regions of the human genome

por Bishara, Alex, Liu, Yuling, Weng, Ziming, Kashef-Haghighi, Dorna, Newburger, Daniel E., West, Robert, Sidow, Arend, Batzoglou, Serafim
Publicado 2015

Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia

por Weng, Ziming, Spies, Noah, Zhu, Shirley X, Newburger, Daniel E, Kashef-Haghighi, Dorna, Batzoglou, Serafim, Sidow, Arend, West, Robert B
Publicado 2015

High-quality genome sequences of uncultured microbes by assembly of read clouds

por Bishara, Alex, Moss, Eli L., Kolmogorov, Mikhail, Parada, Alma E., Weng, Ziming, Sidow, Arend, Dekas, Anne E., Batzoglou, Serafim, Bhatt, Ami S.
Publicado 2018

Genome-wide reconstruction of complex structural variants using read clouds

por Spies, Noah, Weng, Ziming, Bishara, Alex, McDaniel, Jennifer, Catoe, David, Zook, Justin M., Salit, Marc, West, Robert B., Batzoglou, Serafim, Sidow, Arend
Publicado 2017

3′-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples

por Beck, Andrew H., Weng, Ziming, Witten, Daniela M., Zhu, Shirley, Foley, Joseph W., Lacroute, Phil, Smith, Cheryl L., Tibshirani, Robert, van de Rijn, Matt, Sidow, Arend, West, Robert B.
Publicado 2010

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

por Zlitni, Soumaya, Bishara, Alex, Moss, Eli L., Tkachenko, Ekaterina, Kang, Joyce B., Culver, Rebecca N., Andermann, Tessa M., Weng, Ziming, Wood, Christina, Handy, Christine, Ji, Hanlee P., Batzoglou, Serafim, Bhatt, Ami S.
Publicado 2020

Genome evolution during progression to breast cancer

por Newburger, Daniel E., Kashef-Haghighi, Dorna, Weng, Ziming, Salari, Raheleh, Sweeney, Robert T., Brunner, Alayne L., Zhu, Shirley X., Guo, Xiangqian, Varma, Sushama, Troxell, Megan L., West, Robert B., Batzoglou, Serafim, Sidow, Arend
Publicado 2013

Extensive sequencing of seven human genomes to characterize benchmark reference materials

por Zook, Justin M., Catoe, David, McDaniel, Jennifer, Vang, Lindsay, Spies, Noah, Sidow, Arend, Weng, Ziming, Liu, Yuling, Mason, Christopher E., Alexander, Noah, Henaff, Elizabeth, McIntyre, Alexa B.R., Chandramohan, Dhruva, Chen, Feng, Jaeger, Erich, Moshrefi, Ali, Pham, Khoa, Stedman, William, Liang, Tiffany, Saghbini, Michael, Dzakula, Zeljko, Hastie, Alex, Cao, Han, Deikus, Gintaras, Schadt, Eric, Sebra, Robert, Bashir, Ali, Truty, Rebecca M., Chang, Christopher C., Gulbahce, Natali, Zhao, Keyan, Ghosh, Srinka, Hyland, Fiona, Fu, Yutao, Chaisson, Mark, Xiao, Chunlin, Trow, Jonathan, Sherry, Stephen T., Zaranek, Alexander W., Ball, Madeleine, Bobe, Jason, Estep, Preston, Church, George M., Marks, Patrick, Kyriazopoulou-Panagiotopoulou, Sofia, Zheng, Grace X.Y., Schnall-Levin, Michael, Ordonez, Heather S., Mudivarti, Patrice A., Giorda, Kristina, Sheng, Ying, Rypdal, Karoline Bjarnesdatter, Salit, Marc
Publicado 2016