Cost-effective DNA methylation profiling by FML-seq

por Foley, Joseph W, Zhu, Shirley X, West, Robert B
Publicado 2023

Cost-effective DNA methylation profiling by FML-seq

por Foley, Joseph W., Zhu, Shirley X., West, Robert B.
Publicado 2023

Automated Analysis and Classification of Histological Tissue Features by Multi-Dimensional Microscopic Molecular Profiling

por Riordan, Daniel P., Varma, Sushama, West, Robert B., Brown, Patrick O.
Publicado 2015

Fast and scalable inference of multi-sample cancer lineages

por Popic, Victoria, Salari, Raheleh, Hajirasouliha, Iman, Kashef-Haghighi, Dorna, West, Robert B, Batzoglou, Serafim
Publicado 2015

Germline-mediated immunoediting sculpts breast cancer subtypes and metastatic proclivity

por Houlahan, Kathleen E., Khan, Aziz, Greenwald, Noah F, West, Robert B., Angelo, Michael, Curtis, Christina
Publicado 2023

Comparative Gene Expression Profiling of Benign and Malignant Lesions Reveals Candidate Therapeutic Compounds for Leiomyosarcoma

por Edris, Badreddin, Fletcher, Jonathan A., West, Robert B., van de Rijn, Matt, Beck, Andrew H.
Publicado 2012

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer

por Guo, Xiangqian, Zhu, Shirley X, Brunner, Alayne L, van de Rijn, Matt, West, Robert B
Publicado 2013

Detection of Long Non-Coding RNA in Archival Tissue: Correlation with Polycomb Protein Expression in Primary and Metastatic Breast Carcinoma

por Chisholm, Karen M., Wan, Yue, Li, Rui, Montgomery, Kelli D., Chang, Howard Y., West, Robert B.
Publicado 2012

Discovery of recurrent structural variants in nasopharyngeal carcinoma

por Valouev, Anton, Weng, Ziming, Sweeney, Robert T., Varma, Sushama, Le, Quynh-Thu, Kong, Christina, Sidow, Arend, West, Robert B.
Publicado 2014

Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

por Foley, Joseph W., Zhu, Chunfang, Jolivet, Philippe, Zhu, Shirley X., Lu, Peipei, Meaney, Michael J., West, Robert B.
Publicado 2019

Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia

por Weng, Ziming, Spies, Noah, Zhu, Shirley X, Newburger, Daniel E, Kashef-Haghighi, Dorna, Batzoglou, Serafim, Sidow, Arend, West, Robert B
Publicado 2015

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions

por Brunner, Alayne L, Li, Jun, Guo, Xiangqian, Sweeney, Robert T, Varma, Sushama, Zhu, Shirley X, Li, Rui, Tibshirani, Robert, West, Robert B
Publicado 2014

Synthetic whole-slide image tile generation with gene expression profile-infused deep generative models

por Carrillo-Perez, Francisco, Pizurica, Marija, Ozawa, Michael G., Vogel, Hannes, West, Robert B., Kong, Christina S., Herrera, Luis Javier, Shen, Jeanne, Gevaert, Olivier
Publicado 2023

Genome-wide reconstruction of complex structural variants using read clouds

por Spies, Noah, Weng, Ziming, Bishara, Alex, McDaniel, Jennifer, Catoe, David, Zook, Justin M., Salit, Marc, West, Robert B., Batzoglou, Serafim, Sidow, Arend
Publicado 2017

Most canine ameloblastomas harbor HRAS mutations, providing a novel large-animal model of RAS-driven cancer

por Saffari, Persiana S., Vapniarsky, Natalia, Pollack, Anna S., Gong, Xue, Vennam, Sujay, Pollack, Andrew J., Verstraete, Frank J. M., West, Robert B., Arzi, Boaz, Pollack, Jonathan R.
Publicado 2019

YAP-independent mechanotransduction drives breast cancer progression

por Lee, Joanna Y., Chang, Jessica K., Dominguez, Antonia A., Lee, Hong-pyo, Nam, Sungmin, Chang, Julie, Varma, Sushama, Qi, Lei S., West, Robert B., Chaudhuri, Ovijit
Publicado 2019

Integrative Bioinformatics Links HNF1B with Clear Cell Carcinoma and Tumor-Associated Thrombosis

por Cuff, Justin, Salari, Keyan, Clarke, Nicole, Esheba, Ghada E., Forster, Andrew D., Huang, Stephanie, West, Robert B., Higgins, John P., Longacre, Teri A., Pollack, Jonathan R.
Publicado 2013

Recurrent rearrangements of the Myb/SANT-like DNA-binding domain containing 3 gene (MSANTD3) in salivary gland acinic cell carcinoma

por Barasch, Nicholas, Gong, Xue, Kwei, Kevin A., Varma, Sushama, Biscocho, Jewison, Qu, Kunbin, Xiao, Nan, Lipsick, Joseph S., Pelham, Robert J., West, Robert B., Pollack, Jonathan R.
Publicado 2017

Matrix mechanical plasticity regulates cancer cell migration through confining microenvironments

por Wisdom, Katrina M., Adebowale, Kolade, Chang, Julie, Lee, Joanna Y., Nam, Sungmin, Desai, Rajiv, Rossen, Ninna Struck, Rafat, Marjan, West, Robert B., Hodgson, Louis, Chaudhuri, Ovijit
Publicado 2018

Cell cycle progression in confining microenvironments is regulated by a growth-responsive TRPV4-PI3K/Akt-p27(Kip1) signaling axis

por Nam, Sungmin, Gupta, Vivek Kumar, Lee, Hong-pyo, Lee, Joanna Y., Wisdom, Katrina M., Varma, Sushama, Flaum, Eliott Marie, Davis, Ciara, West, Robert B., Chaudhuri, Ovijit
Publicado 2019