Exogenous Sequences in Tumors and Immune Cells (Exotic): A Tool for Estimating the Microbe Abundances in Tumor RNA-seq Data

por Hoyd, Rebecca, Wheeler, Caroline E., Liu, YunZhou, Jagjit Singh, Malvenderjit S., Muniak, Mitchell, Jin, Ning, Denko, Nicholas C., Carbone, David P., Mo, Xiaokui, Spakowicz, Daniel J.
Publicado 2023

Association between Tumor Microbiome and Hypoxia across Anatomic Subsites of Head and Neck Cancers

por Dhakal, Aastha, Upadhyay, Rituraj, Wheeler, Caroline, Hoyd, Rebecca, Karivedu, Vidhya, Gamez, Mauricio E., Valentin, Sasha, Vanputten, Meade, Bhateja, Priyanka, Bonomi, Marcelo, Konieczkowski, David J., Baliga, Sujith, Mitchell, Darrion L., Grecula, John C., Blakaj, Dukagjin M., Denko, Nicholas C., Jhawar, Sachin R., Spakowicz, Daniel
Publicado 2022

The tumor microbiome as a predictor of outcomes in patients with metastatic melanoma treated with immune checkpoint inhibitors

por Wheeler, Caroline E., Coleman, Samuel S., Hoyd, Rebecca, Denko, Louis, Chan, Carlos H.F., Churchman, Michelle L., Denko, Nicholas, Dodd, Rebecca D., Eljilany, Islam, Hardikar, Sheetal, Husain, Marium, Ikeguchi, Alexandra P., Jin, Ning, Ma, Qin, McCarter, Martin D., Osman, Afaf E.G., Robinson, Lary A., Singer, Eric A., Tinoco, Gabriel, Ulrich, Cornelia M., Zakharia, Yousef, Spakowicz, Daniel, Tarhini, Ahmad A., Tan, Aik Choon
Publicado 2023

A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset

por Wang, Cankun, Ma, Anjun, McNutt, Megan E., Hoyd, Rebecca, Wheeler, Caroline E., Robinson, Lary A., Chan, Carlos H.F., Zakharia, Yousef, Dodd, Rebecca D., Ulrich, Cornelia M., Hardikar, Sheetal, Churchman, Michelle L., Tarhini, Ahmad A., Singer, Eric A., Ikeguchi, Alexandra P., McCarter, Martin D., Denko, Nicholas, Tinoco, Gabriel, Husain, Marium, Jin, Ning, Osman, Afaf E.G., Eljilany, Islam, Tan, Aik Choon, Coleman, Samuel S., Denko, Louis, Riedlinger, Gregory, Schneider, Bryan P., Spakowicz, Daniel, Ma, Qin
Publicado 2023