From human genome to cancer genome: The first decade

por Wheeler, David A., Wang, Linghua
Publicado 2013

Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon

por Jaksik, Roman, Wheeler, David A., Kimmel, Marek
Publicado 2023

SubcloneSeeker: a computational framework for reconstructing tumor clone structure for cancer variant interpretation and prioritization

por Qiao, Yi, Quinlan, Aaron R, Jazaeri, Amir A, Verhaak, Roeland GW, Wheeler, David A, Marth, Gabor T
Publicado 2014

Genome-Wide Analysis of Binding Sites and Direct Target Genes of the Orphan Nuclear Receptor NR2F1/COUP-TFI

por Montemayor, Celina, Montemayor, Oscar A., Ridgeway, Alex, Lin, Feng, Wheeler, David A., Pletcher, Scott D., Pereira, Fred A.
Publicado 2010

MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data

por Fan, Yu, Xi, Liu, Hughes, Daniel S. T., Zhang, Jianjun, Zhang, Jianhua, Futreal, P. Andrew, Wheeler, David A., Wang, Wenyi
Publicado 2016

RNAseqCNV: analysis of large-scale copy number variations from RNA-seq data

por Bařinka, Jan, Hu, Zunsong, Wang, Lu, Wheeler, David A., Rahbarinia, Delaram, McLeod, Clay, Gu, Zhaohui, Mullighan, Charles G.
Publicado 2022

ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data

por Rustagi, Navin, Hampton, Oliver A, Li, Jie, Xi, Liu, Gibbs, Richard A., Plon, Sharon E., Kimmel, Marek, Wheeler, David A.
Publicado 2016

SNPdetector: A Software Tool for Sensitive and Accurate SNP Detection

por Zhang, Jinghui, Wheeler, David A, Yakub, Imtiaz, Wei, Sharon, Sood, Raman, Rowe, William, Liu, Paul P, Gibbs, Richard A, Buetow, Kenneth H
Publicado 2005

An enhanced genetic model of colorectal cancer progression history

por Yang, Lixing, Wang, Su, Lee, Jake June-Koo, Lee, Semin, Lee, Eunjung, Shinbrot, Eve, Wheeler, David A., Kucherlapati, Raju, Park, Peter J.
Publicado 2019

Mini-extracorporeal Circulation and Off-pump Techniques Associated with Less Inflammatory Gene Expression as Compared to On-Pump in the 24-hour Postoperative Window Following Coron...

por Brinkman, William T, Squiers, John J, Covington, Kyle R, Wheeler, David A, Arsalan, Mani, Smith, Robert L, Mack, Michael J, DiMaio, J Michael
Publicado 2015

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

por Kaminker, Joshua S, Bergman, Casey M, Kronmiller, Brent, Carlson, Joseph, Svirskas, Robert, Patel, Sandeep, Frise, Erwin, Wheeler, David A, Lewis, Suzanna E, Rubin, Gerald M, Ashburner, Michael, Celniker, Susan E
Publicado 2002

Identifying Gene Disruptions in Novel Balanced de novo Constitutional Translocations in Childhood Cancer Patients by Whole Genome Sequencing

por Ritter, Deborah I., Haines, Katherine, Cheung, Hannah, Davis, Caleb F., Lau, Ching C., Berg, Jonathan S., Brown, Chester W., Thompson, Patrick A., Gibbs, Richard, Wheeler, David A., Plon, Sharon E.
Publicado 2015

SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads

por Hampton, Oliver A., English, Adam C., Wang, Mark, Salerno, William J., Liu, Yue, Muzny, Donna M., Han, Yi, Wheeler, David A., Worley, Kim C., Lupski, James R., Gibbs, Richard A.
Publicado 2017

Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif

por Hamilton, Mark P., Rajapakshe, Kimal, Hartig, Sean M., Reva, Boris, McLellan, Michael D., Kandoth, Cyriac, Ding, Li, Zack, Travis I., Gunaratne, Preethi H., Wheeler, David A., Coarfa, Cristian, McGuire, Sean E.
Publicado 2013

Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication

por Shinbrot, Eve, Henninger, Erin E., Weinhold, Nils, Covington, Kyle R., Göksenin, A. Yasemin, Schultz, Nikolaus, Chao, Hsu, Doddapaneni, HarshaVardhan, Muzny, Donna M., Gibbs, Richard A., Sander, Chris, Pursell, Zachary F., Wheeler, David A.
Publicado 2014

An open access pilot freely sharing cancer genomic data from participants in Texas

por Becnel, Lauren B., Pereira, Stacey, Drummond, Jennifer A., Gingras, Marie-Claude, Covington, Kyle R., Kovar, Christie L., Doddapaneni, Harsha Vardhan, Hu, Jianhong, Muzny, Donna, McGuire, Amy L., Wheeler, David A., Gibbs, Richard A.
Publicado 2016

SMARCA4-inactivating mutations increase sensitivity to Aurora kinase A inhibitor VX-680 in non-small cell lung cancers

por Tagal, Vural, Wei, Shuguang, Zhang, Wei, Brekken, Rolf A., Posner, Bruce A., Peyton, Michael, Girard, Luc, Hwang, TaeHyun, Wheeler, David A., Minna, John D., White, Michael A., Gazdar, Adi F., Roth, Michael G.
Publicado 2017

Glutathione peroxidase 2 is a metabolic driver of the tumor immune microenvironment and immune checkpoint inhibitor response

por Ahmed, Kazi Mokim, Veeramachaneni, Ratna, Deng, Defeng, Putluri, Nagireddy, Putluri, Vasanta, Cardenas, Maria F, Wheeler, David A, Decker, William K, Frederick, Andy I, Kazi, Sawad, Sikora, Andrew G, Sandulache, Vlad C, Frederick, Mitchell J
Publicado 2022

SV-STAT accurately detects structural variation via alignment to reference-based assemblies

por Davis, Caleb F., Ritter, Deborah I., Wheeler, David A., Wang, Hongmei, Ding, Yan, Dugan, Shannon P., Bainbridge, Matthew N., Muzny, Donna M., Rao, Pulivarthi H., Man, Tsz-Kwong, Plon, Sharon E., Gibbs, Richard A., Lau, Ching C.
Publicado 2016

Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta)

por Fawcett, Gloria L, Raveendran, Muthuswamy, Deiros, David Rio, Chen, David, Yu, Fuli, Harris, Ronald Alan, Ren, Yanru, Muzny, Donna M, Reid, Jeffrey G, Wheeler, David A, Worley, Kimberly C, Shelton, Steven E, Kalin, Ned H, Milosavljevic, Aleksandar, Gibbs, Richard, Rogers, Jeffrey
Publicado 2011