Different Facets of Copy Number Changes: Permanent, Transient, and Adaptive

por Mishra, Sweta, Whetstine, Johnathan R.
Publicado 2016

Protocol to isolate cells in four stages of S phase for high-resolution replication-timing sequencing

por Whetstine, Johnathan R., Van Rechem, Capucine
Publicado 2022

A cell-sorting-based protocol for cell cycle small-scale ChIP sequencing

por Whetstine, Johnathan R., Van Rechem, Capucine
Publicado 2022

Computational workflow for integrative analyses of DNA replication timing, epigenomic, and transcriptomic data

por Ji, Fei, Van Rechem, Capucine, Whetstine, Johnathan R., Sadreyev, Ruslan I.
Publicado 2022

Regulation of Transient Site-specific Copy Gain by MicroRNA

por Black, Joshua C., Zhang, Hailei, Kim, Jaegil, Getz, Gad, Whetstine, Johnathan R.
Publicado 2016

Collective regulation of chromatin modifications predicts replication timing during cell cycle

por Van Rechem, Capucine, Ji, Fei, Chakraborty, Damayanti, Black, Joshua C., Sadreyev, Ruslan I., Whetstine, Johnathan R.
Publicado 2021

Histone H3 methylation links DNA damage detection to activation of the Tip60 tumor suppressor

por Sun, Yingli, Jiang, Xiaofeng, Xu, Ye, Ayrapetov, Marina K., Moreau, Lisa A., Whetstine, Johnathan R., Price, Brendan D.
Publicado 2009

Isoflurane impairs oogenesis through germ cell apoptosis in C. elegans

por Zhang, Tao, Ni, Cheng, Li, Cheng, Lu, Pan, Chen, Dan, Dong, Yuanlin, Whetstine, Johnathan R., Zhang, Yiying, Xie, Zhongcong
Publicado 2021

The SKP1-Cul1-F-box and Leucine-rich Repeat Protein 4 (SCF-FbxL4) Ubiquitin Ligase Regulates Lysine Demethylase 4A (KDM4A)/Jumonji Domain-containing 2A (JMJD2A) Protein

por Van Rechem, Capucine, Black, Joshua C., Abbas, Tarek, Allen, Andrew, Rinehart, Claire A., Yuan, Guo-Cheng, Dutta, Anindya, Whetstine, Johnathan R.
Publicado 2011

Dynamic Chromatin Modification Sustains Epithelial-Mesenchymal Transition following Inducible Expression of Snail-1

por Javaid, Sarah, Zhang, Jianmin, Anderssen, Endre, Black, Josh C., Wittner, Ben S., Tajima, Ken, Ting, David T., Smolen, Gromoslaw A., Zubrowski, Matthew, Desai, Rushil, Maheswaran, Shyamala, Ramaswamy, Sridhar, Whetstine, Johnathan R., Haber, Daniel A.
Publicado 2013

SETD1A modulates cell cycle progression through a miRNA network that regulates p53 target genes

por Tajima, Ken, Yae, Toshifumi, Javaid, Sarah, Tam, Oliver, Comaills, Valentine, Morris, Robert, Wittner, Ben S., Liu, Mingzhu, Engstrom, Amanda, Takahashi, Fumiyuki, Black, Joshua C., Ramaswamy, Sridhar, Shioda, Toshihiro, Hammell, Molly, Haber, Daniel A., Whetstine, Johnathan R., Maheswaran, Shyamala
Publicado 2015

Hypoxia drives transient site-specific copy gain and drug-resistant gene expression

por Black, Joshua C., Atabakhsh, Elnaz, Kim, Jaegil, Biette, Kelly M., Van Rechem, Capucine, Ladd, Brendon, Burrowes, Paul d., Donado, Carlos, Mattoo, Hamid, Kleinstiver, Benjamin P., Song, Bing, Andriani, Grasiella, Joung, J. Keith, Iliopoulos, Othon, Montagna, Cristina, Pillai, Shiv, Getz, Gad, Whetstine, Johnathan R.
Publicado 2015

DNA replication fork speed underlies cell fate changes and promotes reprogramming

por Nakatani, Tsunetoshi, Lin, Jiangwei, Ji, Fei, Ettinger, Andreas, Pontabry, Julien, Tokoro, Mikiko, Altamirano-Pacheco, Luis, Fiorentino, Jonathan, Mahammadov, Elmir, Hatano, Yu, Van Rechem, Capucine, Chakraborty, Damayanti, Ruiz-Morales, Elias R., Arguello Pascualli, Paola Y., Scialdone, Antonio, Yamagata, Kazuo, Whetstine, Johnathan R., Sadreyev, Ruslan I., Torres-Padilla, Maria-Elena
Publicado 2022