Predicting the Human Epigenome from DNA Motifs

por Whitaker, John W., Chen, Zhao, Wang, Wei
Publicado 2014

The Transcriptional Response to DNA-Double-Strand Breaks in Physcomitrella patens

por Kamisugi, Yasuko, Whitaker, John W., Cuming, Andrew C.
Publicado 2016

The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes

por Whitaker, John W, McConkey, Glenn A, Westhead, David R
Publicado 2009

metaTIGER: a metabolic evolution resource

por Whitaker, John W., Letunic, Ivica, McConkey, Glenn A., Westhead, David R.
Publicado 2009

Predicting enhancer transcription and activity from chromatin modifications

por Zhu, Yun, Sun, Lin, Chen, Zhao, Whitaker, John W., Wang, Tao, Wang, Wei
Publicado 2013

An imprinted rheumatoid arthritis methylome signature reflects pathogenic phenotype

por Whitaker, John W, Shoemaker, Robert, Boyle, David L, Hillman, Josh, Anderson, David, Wang, Wei, Firestein, Gary S
Publicado 2013

Integrative Omics Analysis of Rheumatoid Arthritis Identifies Non-Obvious Therapeutic Targets

por Whitaker, John W., Boyle, David L., Bartok, Beatrix, Ball, Scott T., Gay, Steffen, Wang, Wei, Firestein, Gary S.
Publicado 2015

Correction: Integrative Omics Analysis of Rheumatoid Arthritis Identifies Non-Obvious Therapeutic Targets

por Whitaker, John W., Boyle, David L., Bartok, Beatrix, Ball, Scott T., Gay, Steffen, Wang, Wei, Firestein, Gary S.
Publicado 2015

Global identification of transcriptional regulators of pluripotency and differentiation in embryonic stem cells

por Won, Kyoung-Jae, Xu, Zheng, Zhang, Xian, Whitaker, John W., Shoemaker, Robert, Ren, Bing, Xu, Yang, Wang, Wei
Publicado 2012

Constructing 3D interaction maps from 1D epigenomes

por Zhu, Yun, Chen, Zhao, Zhang, Kai, Wang, Mengchi, Medovoy, David, Whitaker, John W., Ding, Bo, Li, Nan, Zheng, Lina, Wang, Wei
Publicado 2016

Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations

por Walsh, Alice M., Whitaker, John W., Huang, C. Chris, Cherkas, Yauheniya, Lamberth, Sarah L., Brodmerkel, Carrie, Curran, Mark E., Dobrin, Radu
Publicado 2016

Identification of DNA motifs that regulate DNA methylation

por Wang, Mengchi, Zhang, Kai, Ngo, Vu, Liu, Chengyu, Fan, Shicai, Whitaker, John W, Chen, Yue, Ai, Rizi, Chen, Zhao, Wang, Jun, Zheng, Lina, Wang, Wei
Publicado 2019

Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes

por Ai, Rizi, Laragione, Teresina, Hammaker, Deepa, Boyle, David L., Wildberg, Andre, Maeshima, Keisuke, Palescandolo, Emanuele, Krishna, Vinod, Pocalyko, David, Whitaker, John W., Bai, Yuchen, Nagpal, Sunil, Bachman, Kurtis E., Ainsworth, Richard I., Wang, Mengchi, Ding, Bo, Gulko, Percio S., Wang, Wei, Firestein, Gary S.
Publicado 2018

Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation

por Schultz, Matthew D., He, Yupeng, Whitaker, John W., Hariharan, Manoj, Mukamel, Eran A., Leung, Danny, Rajagopal, Nisha, Nery, Joseph R., Urich, Mark A., Chen, Huaming, Lin, Shin, Lin, Yiing, Jung, Inkyung, Schmitt, Anthony D., Selvaraj, Siddarth, Ren, Bing, Sejnowski, Terrence J., Wang, Wei, Ecker, Joseph R.
Publicado 2015

Integrative analysis of 111 reference human epigenomes

por Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Kheradpour, Pouya, Zhang, Zhizhuo, Heravi-Moussavi, Alireza, Liu, Yaping, Amin, Viren, Ziller, Michael J, Whitaker, John W, Schultz, Matthew D, Sandstrom, Richard S, Eaton, Matthew L, Wu, Yi-Chieh, Wang, Jianrong, Ward, Lucas D, Sarkar, Abhishek, Quon, Gerald, Pfenning, Andreas, Wang, Xinchen, Claussnitzer, Melina, Coarfa, Cristian, Harris, R Alan, Shoresh, Noam, Epstein, Charles B, Gjoneska, Elizabeta, Leung, Danny, Xie, Wei, Hawkins, R David, Lister, Ryan, Hong, Chibo, Gascard, Philippe, Mungall, Andrew J, Moore, Richard, Chuah, Eric, Tam, Angela, Canfield, Theresa K, Hansen, R Scott, Kaul, Rajinder, Sabo, Peter J, Bansal, Mukul S, Carles, Annaick, Dixon, Jesse R, Farh, Kai-How, Feizi, Soheil, Karlic, Rosa, Kim, Ah-Ram, Kulkarni, Ashwinikumar, Li, Daofeng, Lowdon, Rebecca, Mercer, Tim R, Neph, Shane J, Onuchic, Vitor, Polak, Paz, Rajagopal, Nisha, Ray, Pradipta, Sallari, Richard C, Siebenthall, Kyle T, Sinnott-Armstrong, Nicholas, Stevens, Michael, Thurman, Robert E, Wu, Jie, Zhang, Bo, Zhou, Xin, Beaudet, Arthur E, Boyer, Laurie A, De Jager, Philip, Farnham, Peggy J, Fisher, Susan J, Haussler, David, Jones, Steven, Li, Wei, Marra, Marco, McManus, Michael T, Sunyaev, Shamil, Thomson, James A, Tlsty, Thea D, Tsai, Li-Huei, Wang, Wei, Waterland, Robert A, Zhang, Michael, Chadwick, Lisa H, Bernstein, Bradley E, Costello, Joseph F, Ecker, Joseph R, Hirst, Martin, Meissner, Alexander, Milosavljevic, Aleksandar, Ren, Bing, Stamatoyannopoulos, John A, Wang, Ting, Kellis, Manolis
Publicado 2015