Steric interactions lead to collective tilting motion in the ribosome during mRNA–tRNA translocation

por Nguyen, Kien, Whitford, Paul C.
Publicado 2016

How EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosome

por Noel, Jeffrey K., Whitford, Paul C.
Publicado 2016

Simulations of Phage T7 Capsid Expansion Reveal the Role of Molecular Sterics on Dynamics

por Whitford, Paul C., Jiang, Wen, Serwer, Philip
Publicado 2020

A steric gate controls P/E hybrid-state formation of tRNA on the ribosome

por Levi, Mariana, Walak, Kelsey, Wang, Ailun, Mohanty, Udayan, Whitford, Paul C.
Publicado 2020

SMOG@ctbp: simplified deployment of structure-based models in GROMACS

por Noel, Jeffrey K., Whitford, Paul C., Sanbonmatsu, Karissa Y., Onuchic, José N.
Publicado 2010

Connecting the Kinetics and Energy Landscape of tRNA Translocation on the Ribosome

por Whitford, Paul C., Blanchard, Scott C., Cate, Jamie H. D., Sanbonmatsu, Karissa Y.
Publicado 2013

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon–anticodon pairing

por Hoffer, Eric D, Hong, Samuel, Sunita, S, Maehigashi, Tatsuya, Gonzalez, Ruben L, Whitford, Paul C, Dunham, Christine M
Publicado 2020

Substrate-Specific Reorganization of the Conformational Ensemble of CSK Implicates Novel Modes of Kinase Function

por Jamros, Michael A., Oliveira, Leandro C., Whitford, Paul C., Onuchic, José N., Adams, Joseph A., Jennings, Patricia A.
Publicado 2012

SMOG 2: A Versatile Software Package for Generating Structure-Based Models

por Noel, Jeffrey K., Levi, Mariana, Raghunathan, Mohit, Lammert, Heiko, Hayes, Ryan L., Onuchic, José N., Whitford, Paul C.
Publicado 2016

Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase

por Ngu, Lisa, Winters, Jenifer N., Nguyen, Kien, Ramos, Kevin E., DeLateur, Nicholas A., Makowski, Lee, Whitford, Paul C., Ondrechen, Mary Jo, Beuning, Penny J.
Publicado 2020

Ratchet, swivel, tilt and roll: a complete description of subunit rotation in the ribosome

por Hassan, Asem, Byju, Sandra, Freitas, Frederico Campos, Roc, Claude, Pender, Nisaa, Nguyen, Kien, Kimbrough, Evelyn M, Mattingly, Jacob M, Gonzalez Jr., Ruben L, de Oliveira, Ronaldo Junio, Dunham, Christine M, Whitford, Paul C
Publicado 2022

Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools

por Markosian, Christopher, Staquicini, Daniela I., Dogra, Prashant, Dodero-Rojas, Esteban, Tang, Fenny H. F., Smith, Tracey L., Contessoto, Vinícius G., Libutti, Steven K., Wang, Zhihui, Cristini, Vittorio, Whitford, Paul C., Burley, Stephen K., Onuchic, José N., Pasqualini, Renata, Arap, Wadih
Publicado 2021

Head swivel on the ribosome facilitates translocation via intra-subunit tRNA hybrid sites

por Ratje, Andreas H., Loerke, Justus, Mikolajka, Aleksandra, Brünner, Matthias, Hildebrand, Peter W., Starosta, Agata L., Dönhöfer, Alexandra, Connell, Sean R., Fucini, Paola, Mielke, Thorsten, Whitford, Paul C., Onuchic, Jose’ N, Yu, Yanan, Sanbonmatsu, Karissa Y., Hartmann, Roland K., Penczek, Pawel A., Wilson, Daniel N., Spahn, Christian M.T.
Publicado 2010

Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection

por Markosian, Christopher, Staquicini, Daniela I., Dogra, Prashant, Dodero-Rojas, Esteban, Lubin, Joseph H., Tang, Fenny H.F., Smith, Tracey L., Contessoto, Vinícius G., Libutti, Steven K., Wang, Zhihui, Cristini, Vittorio, Khare, Sagar D., Whitford, Paul C., Burley, Stephen K., Onuchic, José N., Pasqualini, Renata, Arap, Wadih
Publicado 2022

Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain

por Staquicini, Daniela I., Tang, Fenny H. F., Markosian, Christopher, Yao, Virginia J., Staquicini, Fernanda I., Dodero-Rojas, Esteban, Contessoto, Vinícius G., Davis, Deodate, O’Brien, Paul, Habib, Nazia, Smith, Tracey L., Bruiners, Natalie, Sidman, Richard L., Gennaro, Maria L., Lattime, Edmund C., Libutti, Steven K., Whitford, Paul C., Burley, Stephen K., Onuchic, José N., Arap, Wadih, Pasqualini, Renata
Publicado 2021

Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain

por Staquicini, Daniela I., Tang, Fenny H. F., Markosian, Christopher, Yao, Virginia J., Staquicini, Fernanda I., Dodero-Rojas, Esteban, Contessoto, Vinícius G., Davis, Deodate, O’Brien, Paul, Habib, Nazia, Smith, Tracey L., Bruiners, Natalie, Sidman, Richard L., Gennaro, Maria L., Lattime, Edmund C., Libutti, Steven K., Whitford, Paul C., Burley, Stephen K., Onuchic, José N., Arap, Wadih, Pasqualini, Renata
Publicado 2021