Benchmarking of long-read assemblers for prokaryote whole genome sequencing

por Wick, Ryan R., Holt, Kathryn E.
Publicado 2021

Polypolish: Short-read polishing of long-read bacterial genome assemblies

por Wick, Ryan R., Holt, Kathryn E.
Publicado 2022

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

por Wick, Ryan R., Judd, Louise M., Holt, Kathryn E.
Publicado 2018

Performance of neural network basecalling tools for Oxford Nanopore sequencing

por Wick, Ryan R., Judd, Louise M., Holt, Kathryn E.
Publicado 2019

Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing

por Wick, Ryan R., Judd, Louise M., Holt, Kathryn E.
Publicado 2023

Bandage: interactive visualization of de novo genome assemblies

por Wick, Ryan R., Schultz, Mark B., Zobel, Justin, Holt, Kathryn E.
Publicado 2015

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes

por Wick, Ryan R., Heinz, Eva, Holt, Kathryn E., Wyres, Kelly L.
Publicado 2018

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

por Wick, Ryan R., Judd, Louise M., Gorrie, Claire L., Holt, Kathryn E.
Publicado 2017

Completing bacterial genome assemblies with multiplex MinION sequencing

por Wick, Ryan R., Judd, Louise M., Gorrie, Claire L., Holt, Kathryn E.
Publicado 2017

Recovery of small plasmid sequences via Oxford Nanopore sequencing

por Wick, Ryan R., Judd, Louise M., Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2

por Mak, Q X Charles, Wick, Ryan R, Holt, James Matthew, Wang, Jeremy R
Publicado 2023

Complete Genome Sequence of A388, an Antibiotic-Resistant Acinetobacter baumannii Global Clone 1 Isolate from Greece

por Hamidian, Mohammad, Wick, Ryan R., Judd, Louise M., Holt, Kathryn E., Hall, Ruth M.
Publicado 2019

Improved Genome Sequence of Australian Methicillin-Resistant Staphylococcus aureus Strain JKD6159

por Wick, Ryan R., Judd, Louise M., Monk, Ian R., Seemann, Torsten, Stinear, Timothy P.
Publicado 2023

GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

por Wan, Yu, Wick, Ryan R., Zobel, Justin, Ingle, Danielle J., Inouye, Michael, Holt, Kathryn E.
Publicado 2020

Kaptive 2.0: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex

por Lam, Margaret M. C., Wick, Ryan R., Judd, Louise M., Holt, Kathryn E., Wyres, Kelly L.
Publicado 2022

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clones 1 and 2

por Hamidian, Mohammad, Wick, Ryan R., Hartstein, Rebecca M., Judd, Louise M., Holt, Kathryn E., Hall, Ruth M.
Publicado 2019

The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns

por Repetti, Sonja I., Jackson, Christopher J., Judd, Louise M., Wick, Ryan R., Holt, Kathryn E., Verbruggen, Heroen
Publicado 2020

Identification of Klebsiella capsule synthesis loci from whole genome data

por Wyres, Kelly L., Wick, Ryan R., Gorrie, Claire, Jenney, Adam, Follador, Rainer, Thomson, Nicholas R., Holt, Kathryn E.
Publicado 2016

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

por Lam, Margaret M. C., Wick, Ryan R., Watts, Stephen C., Cerdeira, Louise T., Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

por Hawkey, Jane, Hamidian, Mohammad, Wick, Ryan R., Edwards, David J., Billman-Jacobe, Helen, Hall, Ruth M., Holt, Kathryn E.
Publicado 2015