Macroalgae Derived Fungi Have High Abilities to Degrade Algal Polymers

por Patyshakuliyeva, Aleksandrina, Falkoski, Daniel L., Wiebenga, Ad, Timmermans, Klaas, de Vries, Ronald P.
Publicado 2019

Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression

por Kowalczyk, Joanna E., Gruben, Birgit S., Battaglia, Evy, Wiebenga, Ad, Majoor, Eline, de Vries, Ronald P.
Publicado 2015

Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level

por Battaglia, Evy, Benoit, Isabelle, van den Brink, Joost, Wiebenga, Ad, Coutinho, Pedro M, Henrissat, Bernard, de Vries, Ronald P
Publicado 2011

Secretion of small proteins is species‐specific within Aspergillus sp

por Valette, Nicolas, Benoit‐Gelber, Isabelle, Falco, Marcos Di, Wiebenga, Ad, de Vries, Ronald P., Gelhaye, Eric, Morel‐Rouhier, Mélanie
Publicado 2016

A genomic survey of proteases in Aspergilli

por Budak, Sebnem Ozturkoglu, Zhou, Miaomiao, Brouwer, Carlo, Wiebenga, Ad, Benoit, Isabelle, Di Falco, Marcos, Tsang, Adrian, de Vries, Ronald P
Publicado 2014

Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi

por Li, Jiajia, Wiebenga, Ad, Lipzen, Anna, Ng, Vivian, Tejomurthula, Sravanthi, Zhang, Yu, Grigoriev, Igor V., Peng, Mao, de Vries, Ronald P.
Publicado 2023

Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger

por Jiang, Yanping, Duarte, Alexandra Vivas, van den Brink, Joost, Wiebenga, Ad, Zou, Gen, Wang, Chengshu, de Vries, Ronald P., Zhou, Zhihua, Benoit, Isabelle
Publicado 2015

Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales)

por Urquhart, Andrew S., Mondo, Stephen J., Mäkelä, Miia R., Hane, James K., Wiebenga, Ad, He, Guifen, Mihaltcheva, Sirma, Pangilinan, Jasmyn, Lipzen, Anna, Barry, Kerrie, de Vries, Ronald P., Grigoriev, Igor V., Idnurm, Alexander
Publicado 2018

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network

por Khosravi, Claire, Kowalczyk, Joanna E., Chroumpi, Tania, Battaglia, Evy, Aguilar Pontes, Maria-Victoria, Peng, Mao, Wiebenga, Ad, Ng, Vivian, Lipzen, Anna, He, Guifen, Bauer, Diane, Grigoriev, Igor V., de Vries, Ronald P.
Publicado 2019

Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation

por Daly, Paul, Peng, Mao, Mitchell, Hugh D., Kim, Young‐Mo, Ansong, Charles, Brewer, Heather, de Gijsel, Peter, Lipton, Mary S., Markillie, Lye Meng, Nicora, Carrie D., Orr, Galya, Wiebenga, Ad, Hildén, Kristiina S., Kabel, Mirjam A., Baker, Scott E., Mäkelä, Miia R., de Vries, Ronald P.
Publicado 2020

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus

por Patyshakuliyeva, Aleksandrina, Jurak, Edita, Kohler, Annegret, Baker, Adam, Battaglia, Evy, de Bruijn, Wouter, Burton, Kerry S, Challen, Michael P, Coutinho, Pedro M, Eastwood, Daniel C, Gruben, Birgit S, Mäkelä, Miia R, Martin, Francis, Nadal, Marina, van den Brink, Joost, Wiebenga, Ad, Zhou, Miaomiao, Henrissat, Bernard, Kabel, Mirjam, Gruppen, Harry, de Vries, Ronald P
Publicado 2013

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

por Suzuki, Hitoshi, MacDonald, Jacqueline, Syed, Khajamohiddin, Salamov, Asaf, Hori, Chiaki, Aerts, Andrea, Henrissat, Bernard, Wiebenga, Ad, vanKuyk, Patricia A, Barry, Kerrie, Lindquist, Erika, LaButti, Kurt, Lapidus, Alla, Lucas, Susan, Coutinho, Pedro, Gong, Yunchen, Samejima, Masahiro, Mahadevan, Radhakrishnan, Abou-Zaid, Mamdouh, de Vries, Ronald P, Igarashi, Kiyohiko, Yadav, Jagjit S, Grigoriev, Igor V, Master, Emma R
Publicado 2012

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

por Levasseur, Anthony, Lomascolo, Anne, Chabrol, Olivier, Ruiz-Dueñas, Francisco J, Boukhris-Uzan, Eva, Piumi, François, Kües, Ursula, Ram, Arthur F J, Murat, Claude, Haon, Mireille, Benoit, Isabelle, Arfi, Yonathan, Chevret, Didier, Drula, Elodie, Jin Kwon, Min, Gouret, Philippe, Lesage-Meessen, Laurence, Lombard, Vincent, Mariette, Jérôme, Noirot, Céline, Park, Joohae, Patyshakuliyeva, Aleksandrina, Sigoillot, Jean Claude, Wiebenga, Ad, Wösten, Han A B, Martin, Francis, Coutinho, Pedro M, de Vries, Ronald P, Martínez, Angel T, Klopp, Christophe, Pontarotti, Pierre, Henrissat, Bernard, Record, Eric
Publicado 2014

Closely related fungi employ diverse enzymatic strategies to degrade plant biomass

por Benoit, Isabelle, Culleton, Helena, Zhou, Miaomiao, DiFalco, Marcos, Aguilar-Osorio, Guillermo, Battaglia, Evy, Bouzid, Ourdia, Brouwer, Carlo P J M, El-Bushari, Hala B O, Coutinho, Pedro M, Gruben, Birgit S, Hildén, Kristiina S, Houbraken, Jos, Barboza, Luis Alexis Jiménez, Levasseur, Anthony, Majoor, Eline, Mäkelä, Miia R, Narang, Hari-Mander, Trejo-Aguilar, Blanca, van den Brink, Joost, vanKuyk, Patricia A, Wiebenga, Ad, McKie, Vincent, McCleary, Barry, Tsang, Adrian, Henrissat, Bernard, de Vries, Ronald P
Publicado 2015

A comparative genomics study of 23 Aspergillus species from section Flavi

por Kjærbølling, Inge, Vesth, Tammi, Frisvad, Jens C., Nybo, Jane L., Theobald, Sebastian, Kildgaard, Sara, Petersen, Thomas Isbrandt, Kuo, Alan, Sato, Atsushi, Lyhne, Ellen K., Kogle, Martin E., Wiebenga, Ad, Kun, Roland S., Lubbers, Ronnie J. M., Mäkelä, Miia R., Barry, Kerrie, Chovatia, Mansi, Clum, Alicia, Daum, Chris, Haridas, Sajeet, He, Guifen, LaButti, Kurt, Lipzen, Anna, Mondo, Stephen, Pangilinan, Jasmyn, Riley, Robert, Salamov, Asaf, Simmons, Blake A., Magnuson, Jon K., Henrissat, Bernard, Mortensen, Uffe H., Larsen, Thomas O., de Vries, Ronald P., Grigoriev, Igor V., Machida, Masayuki, Baker, Scott E., Andersen, Mikael R.
Publicado 2020

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

por Goodwin, Stephen B., Ben M'Barek, Sarrah, Dhillon, Braham, Wittenberg, Alexander H. J., Crane, Charles F., Hane, James K., Foster, Andrew J., Van der Lee, Theo A. J., Grimwood, Jane, Aerts, Andrea, Antoniw, John, Bailey, Andy, Bluhm, Burt, Bowler, Judith, Bristow, Jim, van der Burgt, Ate, Canto-Canché, Blondy, Churchill, Alice C. L., Conde-Ferràez, Laura, Cools, Hans J., Coutinho, Pedro M., Csukai, Michael, Dehal, Paramvir, De Wit, Pierre, Donzelli, Bruno, van de Geest, Henri C., van Ham, Roeland C. H. J., Hammond-Kosack, Kim E., Henrissat, Bernard, Kilian, Andrzej, Kobayashi, Adilson K., Koopmann, Edda, Kourmpetis, Yiannis, Kuzniar, Arnold, Lindquist, Erika, Lombard, Vincent, Maliepaard, Chris, Martins, Natalia, Mehrabi, Rahim, Nap, Jan P. H., Ponomarenko, Alisa, Rudd, Jason J., Salamov, Asaf, Schmutz, Jeremy, Schouten, Henk J., Shapiro, Harris, Stergiopoulos, Ioannis, Torriani, Stefano F. F., Tu, Hank, de Vries, Ronald P., Waalwijk, Cees, Ware, Sarah B., Wiebenga, Ad, Zwiers, Lute-Harm, Oliver, Richard P., Grigoriev, Igor V., Kema, Gert H. J.
Publicado 2011

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

por de Vries, Ronald P., Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Amillis, Sotiris, Uchima, Cristiane Akemi, Anderluh, Gregor, Asadollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Özgür, Benocci, Tiziano, Braus-Stromeyer, Susanna A., Caldana, Camila, Cánovas, David, Cerqueira, Gustavo C., Chen, Fusheng, Chen, Wanping, Choi, Cindy, Clum, Alicia, dos Santos, Renato Augusto Corrêa, Damásio, André Ricardo de Lima, Diallinas, George, Emri, Tamás, Fekete, Erzsébet, Flipphi, Michel, Freyberg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, María Laura, Henrissat, Bernard, Hildén, Kristiina S., Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karányi, Zsolt, Kraševec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen L., Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio F., MacCabe, Andrew, Mäkelä, Miia R., Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos P., Mulé, Giuseppina, Ngan, Chew Yee, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean Paul, Overkamp, Karin M., Park, Hee-Soo, Perrone, Giancarlo, Piumi, Francois, Punt, Peter J., Ram, Arthur F. J., Ramón, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego Mauricio, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Salih, Nadhira S., Samson, Rob A., Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio M., Sun, Hui, Susca, Antonia, Todd, Richard B., Tsang, Adrian, Unkles, Shiela E., van de Wiele, Nathalie, van Rossen-Uffink, Diana, Oliveira, Juliana Velasco de Castro, Vesth, Tammi C., Visser, Jaap, Yu, Jae-Hyuk, Zhou, Miaomiao, Andersen, Mikael R., Archer, David B., Baker, Scott E., Benoit, Isabelle, Brakhage, Axel A., Braus, Gerhard H., Fischer, Reinhard, Frisvad, Jens C., Goldman, Gustavo H., Houbraken, Jos, Oakley, Berl, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, vanKuyk, Patricia A., Wortman, Jennifer, Dyer, Paul S., Grigoriev, Igor V.
Publicado 2017