AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization

por Willems, Sander, Voytik, Eugenia, Skowronek, Patricia, Strauss, Maximilian T., Mann, Matthias
Publicado 2021

Accurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes

por Ammar, Constantin, Schessner, Julia Patricia, Willems, Sander, Michaelis, André C., Mann, Matthias
Publicado 2023

Comparison of fractionation proteomics for local SWATH library building

por Govaert, Elisabeth, Van Steendam, Katleen, Willems, Sander, Vossaert, Liesbeth, Dhaenens, Maarten, Deforce, Dieter
Publicado 2017

Tackling aspecific side reactions during histone propionylation: The promise of reversing overpropionylation

por Meert, Paulien, Dierickx, Sebastiaan, Govaert, Elisabeth, De Clerck, Laura, Willems, Sander, Dhaenens, Maarten, Deforce, Dieter
Publicado 2016

Comprehensive histone epigenetics: A mass spectrometry based screening assay to measure epigenetic toxicity

por Verhelst, Sigrid, De Clerck, Laura, Willems, Sander, Van Puyvelde, Bart, Daled, Simon, Deforce, Dieter, Dhaenens, Maarten
Publicado 2020

AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge

por Voytik, Eugenia, Bludau, Isabell, Willems, Sander, Hansen, Fynn M, Brunner, Andreas-David, Strauss, Maximilian T, Mann, Matthias
Publicado 2021

Histone Sample Preparation for Bottom-Up Mass Spectrometry: A Roadmap to Informed Decisions

por Daled, Simon, Willems, Sander, Van Puyvelde, Bart, Corveleyn, Laura, Verhelst, Sigrid, De Clerck, Laura, Deforce, Dieter, Dhaenens, Maarten
Publicado 2021

AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics

por Zeng, Wen-Feng, Zhou, Xie-Xuan, Willems, Sander, Ammar, Constantin, Wahle, Maria, Bludau, Isabell, Voytik, Eugenia, Strauss, Maximillian T., Mann, Matthias
Publicado 2022

Ethnic minority GP trainees at risk for underperformance assessments: a quantitative cohort study

por van Moppes, Nathanja Mariëtte, Willems, Sander, Nasori, Mana, Bont, Jettie, Akkermans, Reinier, van Dijk, Nynke, van den Muijsenbergh, Maria, Visser, Mechteld
Publicado 2022

Extracting histones for the specific purpose of label‐free MS

por Govaert, Elisabeth, Van Steendam, Katleen, Scheerlinck, Ellen, Vossaert, Liesbeth, Meert, Paulien, Stella, Martina, Willems, Sander, De Clerck, Laura, Dhaenens, Maarten, Deforce, Dieter
Publicado 2016

Proceedings of the EuBIC Winter School 2019

por Kopczynski, Dominik, Bittremieux, Wout, Bouyssié, David, Dorfer, Viktoria, Locard-Paulet, Marie, Van Puyvelde, Bart, Schwämmle, Veit, Soggiu, Alessio, Willems, Sander, Uszkoreit, Julian
Publicado 2019

A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity

por Verhelst, Sigrid, Van Puyvelde, Bart, Willems, Sander, Daled, Simon, Cornelis, Senne, Corveleyn, Laura, Willems, Ewoud, Deforce, Dieter, De Clerck, Laura, Dhaenens, Maarten
Publicado 2022

The structural context of posttranslational modifications at a proteome-wide scale

por Bludau, Isabell, Willems, Sander, Zeng, Wen-Feng, Strauss, Maximilian T., Hansen, Fynn M., Tanzer, Maria C., Karayel, Ozge, Schulman, Brenda A., Mann, Matthias
Publicado 2022

Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF

por Skowronek, Patricia, Thielert, Marvin, Voytik, Eugenia, Tanzer, Maria C., Hansen, Fynn M., Willems, Sander, Karayel, Ozge, Brunner, Andreas-David, Meier, Florian, Mann, Matthias
Publicado 2022

Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human

por De Clerck, Laura, Taelman, Jasin, Popovic, Mina, Willems, Sander, Van der Jeught, Margot, Heindryckx, Björn, De Sutter, Petra, Marks, Hendrik, Deforce, Dieter, Dhaenens, Maarten
Publicado 2019

Synchro-PASEF Allows Precursor-Specific Fragment Ion Extraction and Interference Removal in Data-Independent Acquisition

por Skowronek, Patricia, Krohs, Florian, Lubeck, Markus, Wallmann, Georg, Itang, Ericka C.M., Koval, Polina, Wahle, Maria, Thielert, Marvin, Meier, Florian, Willems, Sander, Raether, Oliver, Mann, Matthias
Publicado 2022

Proteins involved in embryo-maternal interaction around the signalling of maternal recognition of pregnancy in the horse

por Smits, Katrien, Willems, Sander, Van Steendam, Katleen, Van De Velde, Margot, De Lange, Valérie, Ververs, Cyrillus, Roels, Kim, Govaere, Jan, Van Nieuwerburgh, Filip, Peelman, Luc, Deforce, Dieter, Van Soom, Ann
Publicado 2018

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

por Van Puyvelde, Bart, Daled, Simon, Willems, Sander, Gabriels, Ralf, Gonzalez de Peredo, Anne, Chaoui, Karima, Mouton-Barbosa, Emmanuelle, Bouyssié, David, Boonen, Kurt, Hughes, Christopher J., Gethings, Lee A., Perez-Riverol, Yasset, Bloomfield, Nic, Tate, Stephen, Schiltz, Odile, Martens, Lennart, Deforce, Dieter, Dhaenens, Maarten
Publicado 2022

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015

por Wilkins, Katie, Hassan, Mehedi, Francescatto, Margherita, Jespersen, Jakob, Parra, R. Gonzalo, Cuypers, Bart, DeBlasio, Dan, Junge, Alexander, Jigisha, Anupama, Rahman, Farzana, Laenen, Griet, Willems, Sander, Thorrez, Lieven, Moreau, Yves, Raju, Nagarajan, Chothani, Sonia Pankaj, Ramakrishnan, C., Sekijima, Masakazu, Gromiha, M. Michael, Slator, Paddy J, Burroughs, Nigel J, Szałaj, Przemysław, Tang, Zhonghui, Michalski, Paul, Luo, Oskar, Li, Xingwang, Ruan, Yijun, Plewczynski, Dariusz, Fiscon, Giulia, Weitschek, Emanuel, Ciccozzi, Massimo, Bertolazzi, Paola, Felici, Giovanni, Cuypers, Bart, Meysman, Pieter, Vanaerschot, Manu, Berg, Maya, Imamura, Hideo, Dujardin, Jean-Claude, Laukens, Kris, Domanova, Westa, Krycer, James R., Chaudhuri, Rima, Yang, Pengyi, Vafaee, Fatemeh, Fazakerley, Daniel J., Humphrey, Sean J., James, David E., Kuncic, Zdenka
Publicado 2016

Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients

por Van Puyvelde, Bart, Van Uytfanghe, Katleen, Tytgat, Olivier, Van Oudenhove, Laurence, Gabriels, Ralf, Bouwmeester, Robbin, Daled, Simon, Van Den Bossche, Tim, Ramasamy, Pathmanaban, Verhelst, Sigrid, De Clerck, Laura, Corveleyn, Laura, Willems, Sander, Debunne, Nathan, Wynendaele, Evelien, De Spiegeleer, Bart, Judak, Peter, Roels, Kris, De Wilde, Laurie, Van Eenoo, Peter, Reyns, Tim, Cherlet, Marc, Dumont, Emmie, Debyser, Griet, t’Kindt, Ruben, Sandra, Koen, Gupta, Surya, Drouin, Nicolas, Harms, Amy, Hankemeier, Thomas, Jones, Donald J. L., Gupta, Pankaj, Lane, Dan, Lane, Catherine S., El Ouadi, Said, Vincendet, Jean-Baptiste, Morrice, Nick, Oehrle, Stuart, Tanna, Nikunj, Silvester, Steve, Hannam, Sally, Sigloch, Florian C., Bhangu-Uhlmann, Andrea, Claereboudt, Jan, Anderson, N. Leigh, Razavi, Morteza, Degroeve, Sven, Cuypers, Lize, Stove, Christophe, Lagrou, Katrien, Martens, Geert A., Deforce, Dieter, Martens, Lennart, Vissers, Johannes P. C., Dhaenens, Maarten
Publicado 2021