Integrative Genomics Viewer

por Robinson, James T., Thorvaldsdóttir, Helga, Winckler, Wendy, Guttman, Mitchell, Lander, Eric S., Getz, Gad, Mesirov, Jill P.
Publicado 2011

Major copy proportion analysis of tumor samples using SNP arrays

por Li, Cheng, Beroukhim, Rameen, Weir, Barbara A, Winckler, Wendy, Garraway, Levi A, Sellers, William R, Meyerson, Matthew
Publicado 2008

RNA-SeQC: RNA-seq metrics for quality control and process optimization

por DeLuca, David S., Levin, Joshua Z., Sivachenko, Andrey, Fennell, Timothy, Nazaire, Marc-Danie, Williams, Chris, Reich, Michael, Winckler, Wendy, Getz, Gad
Publicado 2012

Absolute quantification of somatic DNA alterations in human cancer

por Carter, Scott L., Cibulskis, Kristian, Helman, Elena, McKenna, Aaron, Shen, Hui, Zack, Travis, Laird, Peter W., Onofrio, Robert C., Winckler, Wendy, Weir, Barbara A., Beroukhim, Rameen, Pellman, David, Levine, Douglas A., Lander, Eric S., Meyerson, Matthew, Getz, Gad
Publicado 2012

Cell-free DNA captures tumor heterogeneity and driver alterations in rapid autopsies with pre-treated metastatic cancer

por Pereira, Bernard, Chen, Christopher T., Goyal, Lipika, Walmsley, Charlotte, Pinto, Christopher J., Baiev, Islam, Allen, Read, Henderson, Laura, Saha, Supriya, Reyes, Stephanie, Taylor, Martin S., Fitzgerald, Donna M., Broudo, Maida Williams, Sahu, Avinash, Gao, Xin, Winckler, Wendy, Brannon, A. Rose, Engelman, Jeffrey A., Leary, Rebecca, Stone, James R., Campbell, Catarina D., Juric, Dejan
Publicado 2021

High-throughput identification of genotype-specific cancer vulnerabilities in mixtures of barcoded tumor cell lines

por Yu, Channing, Mannan, Aristotle M., Yvone, Griselda Metta, Ross, Kenneth N., Zhang, Yan-Ling, Marton, Melissa A., Taylor, Bradley R., Crenshaw, Andrew, Gould, Joshua Z., Tamayo, Pablo, Weir, Barbara A., Tsherniak, Aviad, Wong, Bang, Garraway, Levi A., Shamji, Alykhan F., Palmer, Michelle A., Foley, Michael A., Winckler, Wendy, Schreiber, Stuart L., Kung, Andrew L., Golub, Todd R.
Publicado 2016

The genomic complexity of primary human prostate cancer

por Berger, Michael F., Lawrence, Michael S., Demichelis, Francesca, Drier, Yotam, Cibulskis, Kristian, Sivachenko, Andrey Y., Sboner, Andrea, Esgueva, Raquel, Pflueger, Dorothee, Sougnez, Carrie, Onofrio, Robert, Carter, Scott L., Park, Kyung, Habegger, Lukas, Ambrogio, Lauren, Fennell, Timothy, Parkin, Melissa, Saksena, Gordon, Voet, Douglas, Ramos, Alex H., Pugh, Trevor J., Wilkinson, Jane, Fisher, Sheila, Winckler, Wendy, Mahan, Scott, Ardlie, Kristin, Baldwin, Jennifer, Simons, Jonathan W., Kitabayashi, Naoki, MacDonald, Theresa Y., Kantoff, Philip W., Chin, Lynda, Gabriel, Stacey B., Gerstein, Mark B., Golub, Todd R., Meyerson, Matthew, Tewari, Ashutosh, Lander, Eric S., Getz, Gad, Rubin, Mark A., Garraway, Levi A.
Publicado 2011

Subtype-specific genomic alterations define new targets for soft tissue sarcoma therapy

por Barretina, Jordi, Taylor, Barry S., Banerji, Shantanu, Ramos, Alexis H., Lagos-Quintana, Mariana, DeCarolis, Penelope L., Shah, Kinjal, Socci, Nicholas D., Weir, Barbara A., Ho, Alan, Chiang, Derek Y., Reva, Boris, Mermel, Craig, Getz, Gad, Antipin, Yevgenyi, Beroukhim, Rameen, Major, John E., Hatton, Charlie, Nicoletti, Richard, Hanna, Megan, Sharpe, Ted, Fennell, Tim, Cibulskis, Kristian, Onofrio, Robert C., Saito, Tsuyoshi, Shukla, Neerav, Lau, Christopher, Nelander, Sven, Silver, Serena, Sougnez, Carrie, Viale, Agnes, Winckler, Wendy, Maki, Robert G., Garraway, Levi A., Lash, Alex, Greulich, Heidi, Root, David, Sellers, William R., Schwartz, Gary K., Antonescu, Cristina R., Lander, Eric S., Varmus, Harold E., Ladanyi, Marc, Sander, Chris, Meyerson, Matthew, Singer, Samuel
Publicado 2010

Melanoma genome sequencing reveals frequent PREX2 mutations

por Berger, Michael F., Hodis, Eran, Heffernan, Timothy P., Deribe, Yonathan Lissanu, Lawrence, Michael S., Protopopov, Alexei, Ivanova, Elena, Watson, Ian R., Nickerson, Elizabeth, Ghosh, Papia, Zhang, Hailei, Zeid, Rhamy, Ren, Xiaojia, Cibulskis, Kristian, Sivachenko, Andrey Y., Wagle, Nikhil, Sucker, Antje, Sougnez, Carrie, Onofrio, Robert, Ambrogio, Lauren, Auclair, Daniel, Fennell, Timothy, Carter, Scott L., Drier, Yotam, Stojanov, Petar, Singer, Meredith A., Voet, Douglas, Jing, Rui, Saksena, Gordon, Barretina, Jordi, Ramos, Alex H., Pugh, Trevor J., Stransky, Nicolas, Parkin, Melissa, Winckler, Wendy, Mahan, Scott, Ardlie, Kristin, Baldwin, Jennifer, Wargo, Jennifer, Schadendorf, Dirk, Meyerson, Matthew, Gabriel, Stacey B., Golub, Todd R., Wagner, Stephan N., Lander, Eric S., Getz, Gad, Chin, Lynda, Garraway, Levi A.
Publicado 2012

Initial genome sequencing and analysis of multiple myeloma

por Chapman, Michael A., Lawrence, Michael S., Keats, Jonathan J., Cibulskis, Kristian, Sougnez, Carrie, Schinzel, Anna C., Harview, Christina L., Brunet, Jean-Philippe, Ahmann, Gregory J., Adli, Mazhar, Anderson, Kenneth C., Ardlie, Kristin G., Auclair, Daniel, Baker, Angela, Bergsagel, P. Leif, Bernstein, Bradley E., Drier, Yotam, Fonseca, Rafael, Gabriel, Stacey B., Hofmeister, Craig C., Jagannath, Sundar, Jakubowiak, Andrzej J., Krishnan, Amrita, Levy, Joan, Liefeld, Ted, Lonial, Sagar, Mahan, Scott, Mfuko, Bunmi, Monti, Stefano, Perkins, Louise M., Onofrio, Robb, Pugh, Trevor J., Vincent Rajkumar, S., Ramos, Alex H., Siegel, David S., Sivachenko, Andrey, Trudel, Suzanne, Vij, Ravi, Voet, Douglas, Winckler, Wendy, Zimmerman, Todd, Carpten, John, Trent, Jeff, Hahn, William C., Garraway, Levi A., Meyerson, Matthew, Lander, Eric S., Getz, Gad, Golub, Todd R.
Publicado 2011

Characterization of Nigerian breast cancer reveals prevalent homologous recombination deficiency and aggressive molecular features

por Pitt, Jason J., Riester, Markus, Zheng, Yonglan, Yoshimatsu, Toshio F., Sanni, Ayodele, Oluwasola, Olayiwola, Veloso, Artur, Labrot, Emma, Wang, Shengfeng, Odetunde, Abayomi, Ademola, Adeyinka, Okedere, Babajide, Mahan, Scott, Leary, Rebecca, Macomber, Maura, Ajani, Mustapha, Johnson, Ryan S., Fitzgerald, Dominic, Grundstad, A. Jason, Tuteja, Jigyasa H., Khramtsova, Galina, Zhang, Jing, Sveen, Elisabeth, Hwang, Bryce, Clayton, Wendy, Nkwodimmah, Chibuzor, Famooto, Bisola, Obasi, Esther, Aderoju, Victor, Oludara, Mobolaji, Omodele, Folusho, Akinyele, Odunayo, Adeoye, Adewunmi, Ogundiran, Temidayo, Babalola, Chinedum, MacIsaac, Kenzie, Popoola, Abiodun, Morrissey, Michael P., Chen, Lin S., Wang, Jiebiao, Olopade, Christopher O., Falusi, Adeyinka G., Winckler, Wendy, Haase, Kerstin, Van Loo, Peter, Obafunwa, John, Papoutsakis, Dimitris, Ojengbede, Oladosu, Weber, Barbara, Ibrahim, Nasiru, White, Kevin P., Huo, Dezheng, Olopade, Olufunmilayo I., Barretina, Jordi
Publicado 2018

Author Correction: Characterization of Nigerian breast cancer reveals prevalent homologous recombination deficiency and aggressive molecular features

por Pitt, Jason J., Riester, Markus, Zheng, Yonglan, Yoshimatsu, Toshio F., Sanni, Ayodele, Oluwasola, Olayiwola, Veloso, Artur, Labrot, Emma, Wang, Shengfeng, Odetunde, Abayomi, Ademola, Adeyinka, Okedere, Babajide, Mahan, Scott, Leary, Rebecca, Macomber, Maura, Ajani, Mustapha, Johnson, Ryan S., Fitzgerald, Dominic, Grundstad, A. Jason, Tuteja, Jigyasa H., Khramtsova, Galina, Zhang, Jing, Sveen, Elisabeth, Hwang, Bryce, Clayton, Wendy, Nkwodimmah, Chibuzor, Famooto, Bisola, Obasi, Esther, Aderoju, Victor, Oludara, Mobolaji, Omodele, Folusho, Akinyele, Odunayo, Adeoye, Adewunmi, Ogundiran, Temidayo, Babalola, Chinedum, MacIsaac, Kenzie, Popoola, Abiodun, Morrissey, Michael P., Chen, Lin S., Wang, Jiebiao, Olopade, Christopher O., Falusi, Adeyinka G., Winckler, Wendy, Haase, Kerstin, Van Loo, Peter, Obafunwa, John, Papoutsakis, Dimitris, Ojengbede, Oladosu, Weber, Barbara, Ibrahim, Nasiru, White, Kevin P., Huo, Dezheng, Olopade, Olufunmilayo I., Barretina, Jordi
Publicado 2019

The Metabochip, a Custom Genotyping Array for Genetic Studies of Metabolic, Cardiovascular, and Anthropometric Traits

por Voight, Benjamin F., Kang, Hyun Min, Ding, Jun, Palmer, Cameron D., Sidore, Carlo, Chines, Peter S., Burtt, Noël P., Fuchsberger, Christian, Li, Yanming, Erdmann, Jeanette, Frayling, Timothy M., Heid, Iris M., Jackson, Anne U., Johnson, Toby, Kilpeläinen, Tuomas O., Lindgren, Cecilia M., Morris, Andrew P., Prokopenko, Inga, Randall, Joshua C., Saxena, Richa, Soranzo, Nicole, Speliotes, Elizabeth K., Teslovich, Tanya M., Wheeler, Eleanor, Maguire, Jared, Parkin, Melissa, Potter, Simon, Rayner, N. William, Robertson, Neil, Stirrups, Kathleen, Winckler, Wendy, Sanna, Serena, Mulas, Antonella, Nagaraja, Ramaiah, Cucca, Francesco, Barroso, Inês, Deloukas, Panos, Loos, Ruth J. F., Kathiresan, Sekar, Munroe, Patricia B., Newton-Cheh, Christopher, Pfeufer, Arne, Samani, Nilesh J., Schunkert, Heribert, Hirschhorn, Joel N., Altshuler, David, McCarthy, Mark I., Abecasis, Gonçalo R., Boehnke, Michael
Publicado 2012

Correction: The Metabochip, a Custom Genotyping Array for Genetic Studies of Metabolic, Cardiovascular, and Anthropometric Traits

por Voight, Benjamin F., Kang, Hyun Min, Ding, Jun, Palmer, Cameron D., Sidore, Carlo, Chines, Peter S., Burtt, Noël P., Fuchsberger, Christian, Li, Yanming, Erdmann, Jeanette, Frayling, Timothy M., Heid, Iris M., Jackson, Anne U., Johnson, Toby, Kilpeläinen, Tuomas O., Lindgren, Cecilia M., Morris, Andrew P., Prokopenko, Inga, Randall, Joshua C., Saxena, Richa, Soranzo, Nicole, Speliotes, Elizabeth K., Teslovich, Tanya M., Wheeler, Eleanor, Maguire, Jared, Parkin, Melissa, Potter, Simon, Rayner, N. William, Robertson, Neil, Stirrups, Kathleen, Winckler, Wendy, Sanna, Serena, Mulas, Antonella, Nagaraja, Ramaiah, Cucca, Francesco, Barroso, Inês, Deloukas, Panos, Loos, Ruth J. F., Kathiresan, Sekar, Munroe, Patricia B., Newton-Cheh, Christopher, Pfeufer, Arne, Samani, Nilesh J., Schunkert, Heribert, Hirschhorn, Joel N., Altshuler, David, McCarthy, Mark I., Abecasis, Gonçalo R., Boehnke, Michael
Publicado 2013

The landscape of somatic copy-number alteration across human cancers

por Beroukhim, Rameen, Mermel, Craig H., Porter, Dale, Wei, Guo, Raychaudhuri, Soumya, Donovan, Jerry, Barretina, Jordi, Boehm, Jesse S., Dobson, Jennifer, Urashima, Mitsuyoshi, Mc Henry, Kevin T., Pinchback, Reid M., Ligon, Azra H., Cho, Yoon-Jae, Haery, Leila, Greulich, Heidi, Reich, Michael, Winckler, Wendy, Lawrence, Michael S., Weir, Barbara A., Tanaka, Kumiko E., Chiang, Derek Y., Bass, Adam J., Loo, Alice, Hoffman, Carter, Prensner, John, Liefeld, Ted, Gao, Qing, Yecies, Derek, Signoretti, Sabina, Maher, Elizabeth, Kaye, Frederic J., Sasaki, Hidefumi, Tepper, Joel E., Fletcher, Jonathan A., Tabernero, Josep, Baselga, Jose, Tsao, Ming-Sound, DeMichelis, Francesca, Rubin, Mark A., Janne, Pasi A., Daly, Mark J., Nucera, Carmelo, Levine, Ross L., Ebert, Benjamin L., Gabriel, Stacey, Rustgi, Anil K., Antonescu, Cristina R., Ladanyi, Marc, Letai, Anthony, Garraway, Levi A., Loda, Massimo, Beer, David G., True, Lawrence D., Okamoto, Aikou, Pomeroy, Scott L., Singer, Samuel, Golub, Todd R., Lander, Eric S., Getz, Gad, Sellers, William R., Meyerson, Matthew
Publicado 2010

The Cancer Cell Line Encyclopedia enables predictive modeling of anticancer drug sensitivity

por Barretina, Jordi, Caponigro, Giordano, Stransky, Nicolas, Venkatesan, Kavitha, Margolin, Adam A., Kim, Sungjoon, Wilson, Christopher J., Lehár, Joseph, Kryukov, Gregory V., Sonkin, Dmitriy, Reddy, Anupama, Liu, Manway, Murray, Lauren, Berger, Michael F., Monahan, John E., Morais, Paula, Meltzer, Jodi, Korejwa, Adam, Jané-Valbuena, Judit, Mapa, Felipa A., Thibault, Joseph, Bric-Furlong, Eva, Raman, Pichai, Shipway, Aaron, Engels, Ingo H., Cheng, Jill, Yu, Guoying K., Yu, Jianjun, Aspesi, Peter, de Silva, Melanie, Jagtap, Kalpana, Jones, Michael D., Wang, Li, Hatton, Charles, Palescandolo, Emanuele, Gupta, Supriya, Mahan, Scott, Sougnez, Carrie, Onofrio, Robert C., Liefeld, Ted, MacConaill, Laura, Winckler, Wendy, Reich, Michael, Li, Nanxin, Mesirov, Jill P., Gabriel, Stacey B., Getz, Gad, Ardlie, Kristin, Chan, Vivien, Myer, Vic E., Weber, Barbara L., Porter, Jeff, Warmuth, Markus, Finan, Peter, Harris, Jennifer L., Meyerson, Matthew, Golub, Todd R., Morrissey, Michael P., Sellers, William R., Schlegel, Robert, Garraway, Levi A.
Publicado 2012

Mutational heterogeneity in cancer and the search for new cancer genes

por Lawrence, Michael S., Stojanov, Petar, Polak, Paz, Kryukov, Gregory V., Cibulskis, Kristian, Sivachenko, Andrey, Carter, Scott L., Stewart, Chip, Mermel, Craig H., Roberts, Steven A., Kiezun, Adam, Hammerman, Peter S., McKenna, Aaron, Drier, Yotam, Zou, Lihua, Ramos, Alex H., Pugh, Trevor J., Stransky, Nicolas, Helman, Elena, Kim, Jaegil, Sougnez, Carrie, Ambrogio, Lauren, Nickerson, Elizabeth, Shefler, Erica, Cortés, Maria L., Auclair, Daniel, Saksena, Gordon, Voet, Douglas, Noble, Michael, DiCara, Daniel, Lin, Pei, Lichtenstein, Lee, Heiman, David I., Fennell, Timothy, Imielinski, Marcin, Hernandez, Bryan, Hodis, Eran, Baca, Sylvan, Dulak, Austin M., Lohr, Jens, Landau, Dan-Avi, Wu, Catherine J., Melendez-Zajgla, Jorge, Hidalgo-Miranda, Alfredo, Koren, Amnon, McCarroll, Steven A., Mora, Jaume, Crompton, Brian, Onofrio, Robert, Parkin, Melissa, Winckler, Wendy, Ardlie, Kristin, Gabriel, Stacey B., Roberts, Charles W. M., Biegel, Jaclyn A., Stegmaier, Kimberly, Bass, Adam J., Garraway, Levi A., Meyerson, Matthew, Golub, Todd R., Gordenin, Dmitry A., Sunyaev, Shamil, Lander, Eric S., Getz, Gad
Publicado 2013

Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes

por Morris, Andrew P, Voight, Benjamin F, Teslovich, Tanya M, Ferreira, Teresa, Segrè, Ayellet V, Steinthorsdottir, Valgerdur, Strawbridge, Rona J, Khan, Hassan, Grallert, Harald, Mahajan, Anubha, Prokopenko, Inga, Kang, Hyun Min, Dina, Christian, Esko, Tonu, Fraser, Ross M, Kanoni, Stavroula, Kumar, Ashish, Lagou, Vasiliki, Langenberg, Claudia, Luan, Jian'an, Lindgren, Cecilia M, Müller-Nurasyid, Martina, Pechlivanis, Sonali, Rayner, N William, Scott, Laura J, Wiltshire, Steven, Yengo, Loic, Kinnunen, Leena, Rossin, Elizabeth J, Raychaudhuri, Soumya, Johnson, Andrew D, Dimas, Antigone S, Loos, Ruth J F, Vedantam, Sailaja, Chen, Han, Florez, Jose C, Fox, Caroline, Liu, Ching-Ti, Rybin, Denis, Couper, David J, Kao, Wen Hong L, Li, Man, Cornelis, Marilyn C, Kraft, Peter, Sun, Qi, van Dam, Rob M, Stringham, Heather M, Chines, Peter S, Fischer, Krista, Fontanillas, Pierre, Holmen, Oddgeir L, Hunt, Sarah E, Jackson, Anne U, Kong, Augustine, Lawrence, Robert, Meyer, Julia, Perry, John RB, Platou, Carl GP, Potter, Simon, Rehnberg, Emil, Robertson, Neil, Sivapalaratnam, Suthesh, Stančáková, Alena, Stirrups, Kathleen, Thorleifsson, Gudmar, Tikkanen, Emmi, Wood, Andrew R, Almgren, Peter, Atalay, Mustafa, Benediktsson, Rafn, Bonnycastle, Lori L, Burtt, Noël, Carey, Jason, Charpentier, Guillaume, Crenshaw, Andrew T, Doney, Alex S F, Dorkhan, Mozhgan, Edkins, Sarah, Emilsson, Valur, Eury, Elodie, Forsen, Tom, Gertow, Karl, Gigante, Bruna, Grant, George B, Groves, Christopher J, Guiducci, Candace, Herder, Christian, Hreidarsson, Astradur B, Hui, Jennie, James, Alan, Jonsson, Anna, Rathmann, Wolfgang, Klopp, Norman, Kravic, Jasmina, Krjutškov, Kaarel, Langford, Cordelia, Leander, Karin, Lindholm, Eero, Lobbens, Stéphane, Männistö, Satu, Mirza, Ghazala, Mühleisen, Thomas W, Musk, Bill, Parkin, Melissa, Rallidis, Loukianos, Saramies, Jouko, Sennblad, Bengt, Shah, Sonia, Sigurðsson, Gunnar, Silveira, Angela, Steinbach, Gerald, Thorand, Barbara, Trakalo, Joseph, Veglia, Fabrizio, Wennauer, Roman, Winckler, Wendy, Zabaneh, Delilah, Campbell, Harry, van Duijn, Cornelia, Uitterlinden89-, Andre G, Hofman, Albert, Sijbrands, Eric, Abecasis, Goncalo R, Owen, Katharine R, Zeggini, Eleftheria, Trip, Mieke D, Forouhi, Nita G, Syvänen, Ann-Christine, Eriksson, Johan G, Peltonen, Leena, Nöthen, Markus M, Balkau, Beverley, Palmer, Colin N A, Lyssenko, Valeriya, Tuomi, Tiinamaija, Isomaa, Bo, Hunter, David J, Qi, Lu, Shuldiner, Alan R, Roden, Michael, Barroso, Ines, Wilsgaard, Tom, Beilby, John, Hovingh, Kees, Price, Jackie F, Wilson, James F, Rauramaa, Rainer, Lakka, Timo A, Lind, Lars, Dedoussis, George, Njølstad, Inger, Pedersen, Nancy L, Khaw, Kay-Tee, Wareham, Nicholas J, Keinanen-Kiukaanniemi, Sirkka M, Saaristo, Timo E, Korpi-Hyövälti, Eeva, Saltevo, Juha, Laakso, Markku, Kuusisto, Johanna, Metspalu, Andres, Collins, Francis S, Mohlke, Karen L, Bergman, Richard N, Tuomilehto, Jaakko, Boehm, Bernhard O, Gieger, Christian, Hveem, Kristian, Cauchi, Stephane, Froguel, Philippe, Baldassarre, Damiano, Tremoli, Elena, Humphries, Steve E, Saleheen, Danish, Danesh, John, Ingelsson, Erik, Ripatti, Samuli, Salomaa, Veikko, Erbel, Raimund, Jöckel, Karl-Heinz, Moebus, Susanne, Peters, Annette, Illig, Thomas, de Faire, Ulf, Hamsten, Anders, Morris, Andrew D, Donnelly, Peter J, Frayling, Timothy M, Hattersley, Andrew T, Boerwinkle, Eric, Melander, Olle, Kathiresan, Sekar, Nilsson, Peter M, Deloukas, Panos, Thorsteinsdottir, Unnur, Groop, Leif C, Stefansson, Kari, Hu, Frank, Pankow, James S, Dupuis, Josée, Meigs, James B, Altshuler, David, Boehnke, Michael, McCarthy, Mark I
Publicado 2012