Phosphoproteomics-Based Profiling of Kinase Activities in Cancer Cells

por Wirbel, Jakob, Cutillas, Pedro, Saez-Rodriguez, Julio
Publicado 2017

Red Blood Cells Preconditioned with Hemin Are Less Permissive to Plasmodium Invasion In Vivo and In Vitro

por Gaudreault, Véronique, Wirbel, Jakob, Jardim, Armando, Rohrbach, Petra, Scorza, Tatiana
Publicado 2015

Metabolic models predict bacterial passengers in colorectal cancer

por Garza, Daniel R., Taddese, Rahwa, Wirbel, Jakob, Zeller, Georg, Boleij, Annemarie, Huynen, Martijn A., Dutilh, Bas E.
Publicado 2020

Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO

por Velten, Britta, Braunger, Jana M., Argelaguet, Ricard, Arnol, Damien, Wirbel, Jakob, Bredikhin, Danila, Zeller, Georg, Stegle, Oliver
Publicado 2022

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox

por Wirbel, Jakob, Zych, Konrad, Essex, Morgan, Karcher, Nicolai, Kartal, Ece, Salazar, Guillem, Bork, Peer, Sunagawa, Shinichi, Zeller, Georg
Publicado 2021

Depression and fatigue in active IBD from a microbiome perspective—a Bayesian approach to faecal metagenomics

por Thomann, Anne Kerstin, Wüstenberg, Torsten, Wirbel, Jakob, Knoedler, Laura-Louise, Thomann, Philipp Arthur, Zeller, Georg, Ebert, Matthias Philip, Lis, Stefanie, Reindl, Wolfgang
Publicado 2022

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

por Ruscheweyh, Hans-Joachim, Milanese, Alessio, Paoli, Lucas, Karcher, Nicolai, Clayssen, Quentin, Keller, Marisa Isabell, Wirbel, Jakob, Bork, Peer, Mende, Daniel R., Zeller, Georg, Sunagawa, Shinichi
Publicado 2022

Intragenic DNA inversions expand bacterial coding capacity

por Chanin, Rachael B., West, Patrick T., Park, Ryan M., Wirbel, Jakob, Green, Gabriella Z. M., Miklos, Arjun M., Gill, Matthew O., Hickey, Angela S., Brooks, Erin F., Bhatt, Ami S.
Publicado 2023

Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data

por Sambruni, Gaia, Macandog, Angeli D., Wirbel, Jakob, Cagnina, Danilo, Catozzi, Carlotta, Dallavilla, Tiziano, Borgo, Francesca, Fazio, Nicola, Fumagalli-Romario, Uberto, Petz, Wanda L., Manzo, Teresa, Ravenda, Simona P., Zeller, Georg, Nezi, Luigi, Schaefer, Martin H.
Publicado 2023

Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis

por Bernardo-Faura, Marti, Rinas, Melanie, Wirbel, Jakob, Pertsovskaya, Inna, Pliaka, Vicky, Messinis, Dimitris E., Vila, Gemma, Sakellaropoulos, Theodore, Faigle, Wolfgang, Stridh, Pernilla, Behrens, Janina R., Olsson, Tomas, Martin, Roland, Paul, Friedemann, Alexopoulos, Leonidas G., Villoslada, Pablo, Saez-Rodriguez, Julio
Publicado 2021

Extensive transmission of microbes along the gastrointestinal tract

por Schmidt, Thomas SB, Hayward, Matthew R, Coelho, Luis P, Li, Simone S, Costea, Paul I, Voigt, Anita Y, Wirbel, Jakob, Maistrenko, Oleksandr M, Alves, Renato JC, Bergsten, Emma, de Beaufort, Carine, Sobhani, Iradj, Heintz-Buschart, Anna, Sunagawa, Shinichi, Zeller, Georg, Wilmes, Paul, Bork, Peer
Publicado 2019

Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial

por Sowah, Solomon A., Milanese, Alessio, Schübel, Ruth, Wirbel, Jakob, Kartal, Ece, Johnson, Theron S., Hirche, Frank, Grafetstätter, Mirja, Nonnenmacher, Tobias, Kirsten, Romy, López-Nogueroles, Marina, Lahoz, Agustín, Schwarz, Kathrin V., Okun, Jürgen G., Ulrich, Cornelia M., Nattenmüller, Johanna, von Eckardstein, Arnold, Müller, Daniel, Stangl, Gabriele I., Kaaks, Rudolf, Kühn, Tilman, Zeller, Georg
Publicado 2022

A faecal microbiota signature with high specificity for pancreatic cancer

por Kartal, Ece, Schmidt, Thomas S B, Molina-Montes, Esther, Rodríguez-Perales, Sandra, Wirbel, Jakob, Maistrenko, Oleksandr M, Akanni, Wasiu A, Alashkar Alhamwe, Bilal, Alves, Renato J, Carrato, Alfredo, Erasmus, Hans-Peter, Estudillo, Lidia, Finkelmeier, Fabian, Fullam, Anthony, Glazek, Anna M, Gómez-Rubio, Paulina, Hercog, Rajna, Jung, Ferris, Kandels, Stefanie, Kersting, Stephan, Langheinrich, Melanie, Márquez, Mirari, Molero, Xavier, Orakov, Askarbek, Van Rossum, Thea, Torres-Ruiz, Raul, Telzerow, Anja, Zych, Konrad, Benes, Vladimir, Zeller, Georg, Trebicka, Jonel, Real, Francisco X, Malats, Nuria, Bork, Peer
Publicado 2022