RNAProbe: a web server for normalization and analysis of RNA structure probing data

por Wirecki, Tomasz K, Merdas, Katarzyna, Bernat, Agata, Boniecki, Michał J, Bujnicki, Janusz M, Stefaniak, Filip
Publicado 2020

Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements

por Manfredonia, Ilaria, Nithin, Chandran, Ponce-Salvatierra, Almudena, Ghosh, Pritha, Wirecki, Tomasz K, Marinus, Tycho, Ogando, Natacha S, Snijder, Eric J, van Hemert, Martijn J, Bujnicki, Janusz M, Incarnato, Danny
Publicado 2020

MODOMICS: a database of RNA modification pathways. 2017 update

por Boccaletto, Pietro, Machnicka, Magdalena A, Purta, Elzbieta, Piątkowski, Paweł, Bagiński, Błażej, Wirecki, Tomasz K, de Crécy-Lagard, Valérie, Ross, Robert, Limbach, Patrick A, Kotter, Annika, Helm, Mark, Bujnicki, Janusz M
Publicado 2018

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information

por Boccaletto, Pietro, Magnus, Marcin, Almeida, Catarina, Żyła, Adriana, Astha, Astha, Pluta, Radosław, Bagiński, Błażej, Jankowska, Elżbieta, Dunin-Horkawicz, Stanisław, Wirecki, Tomasz K, Boniecki, Michał J, Stefaniak, Filip, Bujnicki, Janusz M
Publicado 2018

A unified coarse-grained model of biological macromolecules based on mean-field multipole–multipole interactions

por Liwo, Adam, Baranowski, Maciej, Czaplewski, Cezary, Gołaś, Ewa, He, Yi, Jagieła, Dawid, Krupa, Paweł, Maciejczyk, Maciej, Makowski, Mariusz, Mozolewska, Magdalena A., Niadzvedtski, Andrei, Ołdziej, Stanisław, Scheraga, Harold A., Sieradzan, Adam K., Ślusarz, Rafał, Wirecki, Tomasz, Yin, Yanping, Zaborowski, Bartłomiej
Publicado 2014

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models

por Gumna, Julita, Antczak, Maciej, Adamiak, Ryszard W., Bujnicki, Janusz M., Chen, Shi-Jie, Ding, Feng, Ghosh, Pritha, Li, Jun, Mukherjee, Sunandan, Nithin, Chandran, Pachulska-Wieczorek, Katarzyna, Ponce-Salvatierra, Almudena, Popenda, Mariusz, Sarzynska, Joanna, Wirecki, Tomasz, Zhang, Dong, Zhang, Sicheng, Zok, Tomasz, Westhof, Eric, Miao, Zhichao, Szachniuk, Marta, Rybarczyk, Agnieszka
Publicado 2022

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

por Keasar, Chen, McGuffin, Liam J., Wallner, Björn, Chopra, Gaurav, Adhikari, Badri, Bhattacharya, Debswapna, Blake, Lauren, Bortot, Leandro Oliveira, Cao, Renzhi, Dhanasekaran, B. K., Dimas, Itzhel, Faccioli, Rodrigo Antonio, Faraggi, Eshel, Ganzynkowicz, Robert, Ghosh, Sambit, Ghosh, Soma, Giełdoń, Artur, Golon, Lukasz, He, Yi, Heo, Lim, Hou, Jie, Khan, Main, Khatib, Firas, Khoury, George A., Kieslich, Chris, Kim, David E., Krupa, Pawel, Lee, Gyu Rie, Li, Hongbo, Li, Jilong, Lipska, Agnieszka, Liwo, Adam, Maghrabi, Ali Hassan A., Mirdita, Milot, Mirzaei, Shokoufeh, Mozolewska, Magdalena A., Onel, Melis, Ovchinnikov, Sergey, Shah, Anand, Shah, Utkarsh, Sidi, Tomer, Sieradzan, Adam K., Ślusarz, Magdalena, Ślusarz, Rafal, Smadbeck, James, Tamamis, Phanourios, Trieber, Nicholas, Wirecki, Tomasz, Yin, Yanping, Zhang, Yang, Bacardit, Jaume, Baranowski, Maciej, Chapman, Nicholas, Cooper, Seth, Defelicibus, Alexandre, Flatten, Jeff, Koepnick, Brian, Popović, Zoran, Zaborowski, Bartlomiej, Baker, David, Cheng, Jianlin, Czaplewski, Cezary, Delbem, Alexandre Cláudio Botazzo, Floudas, Christodoulos, Kloczkowski, Andrzej, Ołdziej, Stanislaw, Levitt, Michael, Scheraga, Harold, Seok, Chaok, Söding, Johannes, Vishveshwara, Saraswathi, Xu, Dong, Crivelli, Silvia N.
Publicado 2018