Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

por Vlasblom, James, Wodak, Shoshana J
Publicado 2009

Relating destabilizing regions to known functional sites in proteins

por Dessailly, Benoît H, Lensink, Marc F, Wodak, Shoshana J
Publicado 2007

Metabolic PathFinding: inferring relevant pathways in biochemical networks

por Croes, Didier, Couche, Fabian, Wodak, Shoshana J., van Helden, Jacques
Publicado 2005

Up-to-date catalogues of yeast protein complexes

por Pu, Shuye, Wong, Jessica, Turner, Brian, Cho, Emerson, Wodak, Shoshana J.
Publicado 2009

Transcriptional regulation of protein complexes in yeast

por Simonis, Nicolas, van Helden, Jacques, Cohen, George N, Wodak, Shoshana J
Publicado 2004

Integration of Data from Liquid–Liquid Phase Separation Databases Highlights Concentration and Dosage Sensitivity of LLPS Drivers

por Farahi, Nazanin, Lazar, Tamas, Wodak, Shoshana J., Tompa, Peter, Pancsa, Rita
Publicado 2021

LigASite—a database of biologically relevant binding sites in proteins with known apo-structures

por Dessailly, Benoit H., Lensink, Marc F., Orengo, Christine A., Wodak, Shoshana J.
Publicado 2008

Literature curation of protein interactions: measuring agreement across major public databases

por Turinsky, Andrei L., Razick, Sabry, Turner, Brian, Donaldson, Ian M., Wodak, Shoshana J.
Publicado 2010

Lead Generation and Optimization Based on Protein-Ligand Complementarity

por Ogata, Koji, Isomura, Tetsu, Kawata, Shinji, Yamashita, Hiroshi, Kubodera, Hideo, Wodak, Shoshana J.
Publicado 2010

Insight into membraneless organelles and their associated proteins: Drivers, Clients and Regulators

por Orti, Fernando, Navarro, Alvaro M., Rabinovich, Andres, Wodak, Shoshana J., Marino-Buslje, Cristina
Publicado 2021

Topic Pages: PLoS Computational Biology Meets Wikipedia

por Wodak, Shoshana J., Mietchen, Daniel, Collings, Andrew M., Russell, Robert B., Bourne, Philip E.
Publicado 2012

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies

por Waman, Vaishali P, Sen, Neeladri, Varadi, Mihaly, Daina, Antoine, Wodak, Shoshana J, Zoete, Vincent, Velankar, Sameer, Orengo, Christine
Publicado 2020

OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms

por Hao, Yanqi, Merkoulovitch, Anna, Vlasblom, James, Pu, Shuye, Turinsky, Andrei L., Roudeva, Denitza, Turner, Brian, Greenblatt, Jack, Wodak, Shoshana J.
Publicado 2011

Expanding the Landscape of Chromatin Modification (CM)-Related Functional Domains and Genes in Human

por Pu, Shuye, Turinsky, Andrei L., Vlasblom, James, On, Tuan, Xiong, Xuejian, Emili, Andrew, Zhang, Zhaolei, Greenblatt, Jack, Parkinson, John, Wodak, Shoshana J.
Publicado 2010

Intercellular network structure and regulatory motifs in the human hematopoietic system

por Qiao, Wenlian, Wang, Weijia, Laurenti, Elisa, Turinsky, Andrei L, Wodak, Shoshana J, Bader, Gary D, Dick, John E, Zandstra, Peter W
Publicado 2014

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence

por Turner, Brian, Razick, Sabry, Turinsky, Andrei L., Vlasblom, James, Crowdy, Edgard K., Cho, Emerson, Morrison, Kyle, Donaldson, Ian M., Wodak, Shoshana J.
Publicado 2010

Savant Genome Browser 2: visualization and analysis for population-scale genomics

por Fiume, Marc, Smith, Eric J. M., Brook, Andrew, Strbenac, Dario, Turner, Brian, Mezlini, Aziz M., Robinson, Mark D., Wodak, Shoshana J., Brudno, Michael
Publicado 2012

Interplay of buried histidine protonation and protein stability in prion misfolding

por Malevanets, Anatoly, Chong, P. Andrew, Hansen, D. Flemming, Rizk, Paul, Sun, Yulong, Lin, Hong, Muhandiram, Ranjith, Chakrabartty, Avi, Kay, Lewis E., Forman-Kay, Julie D., Wodak, Shoshana J.
Publicado 2017

Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences

por Santos, Miguel A., Turinsky, Andrei L., Ong, Serene, Tsai, Jennifer, Berger, Michael F., Badis, Gwenael, Talukder, Shaheynoor, Gehrke, Andrew R., Bulyk, Martha L., Hughes, Timothy R., Wodak, Shoshana J.
Publicado 2010

DAnCER: Disease-Annotated Chromatin Epigenetics Resource

por Turinsky, Andrei L., Turner, Brian, Borja, Rosanne C., Gleeson, James A., Heath, Michael, Pu, Shuye, Switzer, Thomas, Dong, Dong, Gong, Yunchen, On, Tuan, Xiong, Xuejian, Emili, Andrew, Greenblatt, Jack, Parkinson, John, Zhang, Zhaolei, Wodak, Shoshana J.
Publicado 2011