Transforming L1000 profiles to RNA-seq-like profiles with deep learning

por Jeon, Minji, Xie, Zhuorui, Evangelista, John E., Wojciechowicz, Megan L., Clarke, Daniel J. B., Ma’ayan, Avi
Publicado 2022

Geneshot: search engine for ranking genes from arbitrary text queries

por Lachmann, Alexander, Schilder, Brian M, Wojciechowicz, Megan L, Torre, Denis, Kuleshov, Maxim V, Keenan, Alexandra B, Ma’ayan, Avi
Publicado 2019

lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs

por Marino, Giacomo B, Wojciechowicz, Megan L, Clarke, Daniel J B, Kuleshov, Maxim V, Xie, Zhuorui, Jeon, Minji, Lachmann, Alexander, Ma’ayan, Avi
Publicado 2023

modEnrichr: a suite of gene set enrichment analysis tools for model organisms

por Kuleshov, Maxim V, Diaz, Jennifer E L, Flamholz, Zachary N, Keenan, Alexandra B, Lachmann, Alexander, Wojciechowicz, Megan L, Cagan, Ross L, Ma’ayan, Avi
Publicado 2019

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

por Keenan, Alexandra B, Torre, Denis, Lachmann, Alexander, Leong, Ariel K, Wojciechowicz, Megan L, Utti, Vivian, Jagodnik, Kathleen M, Kropiwnicki, Eryk, Wang, Zichen, Ma’ayan, Avi
Publicado 2019

SigCom LINCS: data and metadata search engine for a million gene expression signatures

por Evangelista, John Erol, Clarke, Daniel J B, Xie, Zhuorui, Lachmann, Alexander, Jeon, Minji, Chen, Kerwin, Jagodnik, Kathleen M, Jenkins, Sherry L, Kuleshov, Maxim V, Wojciechowicz, Megan L, Schürer, Stephan C, Medvedovic, Mario, Ma’ayan, Avi
Publicado 2022

Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing

por Clarke, Daniel J. B., Rebman, Alison W., Bailey, Allison, Wojciechowicz, Megan L., Jenkins, Sherry L., Evangelista, John E., Danieletto, Matteo, Fan, Jinshui, Eshoo, Mark W., Mosel, Michael R., Robinson, William, Ramadoss, Nitya, Bobe, Jason, Soloski, Mark J., Aucott, John N., Ma'ayan, Avi
Publicado 2021

Appyters: Turning Jupyter Notebooks into data-driven web apps

por Clarke, Daniel J.B., Jeon, Minji, Stein, Daniel J., Moiseyev, Nicole, Kropiwnicki, Eryk, Dai, Charles, Xie, Zhuorui, Wojciechowicz, Megan L., Litz, Skylar, Hom, Jason, Evangelista, John Erol, Goldman, Lucas, Zhang, Serena, Yoon, Christine, Ahamed, Tahmid, Bhuiyan, Samantha, Cheng, Minxuan, Karam, Julie, Jagodnik, Kathleen M., Shu, Ingrid, Lachmann, Alexander, Ayling, Sam, Jenkins, Sherry L., Ma'ayan, Avi
Publicado 2021