Influence network model uncovers relations between biological processes and mutational signatures

por Amgalan, Bayarbaatar, Wojtowicz, Damian, Kim, Yoo-Ah, Przytycka, Teresa M.
Publicado 2023

Ups and Downs of Poised RNA Polymerase II in B-Cells

por Dao, Phuong, Wojtowicz, Damian, Nelson, Steevenson, Levens, David, Przytycka, Teresa M.
Publicado 2016

DNA REPAIR FOOTPRINT UNCOVERS CONTRIBUTION OF DNA REPAIR MECHANISM TO MUTATIONAL SIGNATURES

por Wojtowicz, Damian, Leiserson, Mark D.M., Sharan, Roded, Przytycka, Teresa M.
Publicado 2020

Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression

por Salari, Raheleh, Wojtowicz, Damian, Zheng, Jie, Levens, David, Pilpel, Yitzhak, Przytycka, Teresa M.
Publicado 2012

Correction: Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression

por Salari, Raheleh, Wojtowicz, Damian, Zheng, Jie, Levens, David, Pilpel, Yitzhak, Przytycka, Teresa M.
Publicado 2012

BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions

por Dao, Phuong, Kim, Yoo-Ah, Wojtowicz, Damian, Madan, Sanna, Sharan, Roded, Przytycka, Teresa M.
Publicado 2017

Mutational Signatures as Sensors of Environmental Exposures: Analysis of Smoking-Induced Lung Tissue Remodeling

por Kim, Yoo-Ah, Hodzic, Ermin, Amgalan, Bayarbaatar, Saslafsky, Ariella, Wojtowicz, Damian, Przytycka, Teresa M.
Publicado 2022

The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli

por Du, Xiangjun, Wojtowicz, Damian, Bowers, Albert A., Levens, David, Benham, Craig J., Przytycka, Teresa M.
Publicado 2013

DNA Break Mapping Reveals Topoisomerase II Activity Genome-Wide

por Baranello, Laura, Kouzine, Fedor, Wojtowicz, Damian, Cui, Kairong, Przytycka, Teresa M., Zhao, Keji, Levens, David
Publicado 2014

A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer

por Sason, Itay, Wojtowicz, Damian, Robinson, Welles, Leiserson, Mark D.M., Przytycka, Teresa M., Sharan, Roded
Publicado 2020

Dosage-Dependent Expression Variation Suppressed on the Drosophila Male X Chromosome

por Lee, Hangnoh, Cho, Dong-Yeon, Wojtowicz, Damian, Harbison, Susan T., Russell, Steven, Oliver, Brian, Przytycka, Teresa M.
Publicado 2017

Transcription dependent dynamic supercoiling is a short-range genomic force

por Kouzine, Fedor, Gupta, Ashutosh, Baranello, Laura, Wojtowicz, Damian, Benaissa, Khadija, Liu, Juhong, Przytycka, Teresa M., Levens, David
Publicado 2013

Identifying Drug Sensitivity Subnetworks with NETPHIX

por Kim, Yoo-Ah, Sarto Basso, Rebecca, Wojtowicz, Damian, Liu, Amanda S., Hochbaum, Dorit S., Vandin, Fabio, Przytycka, Teresa M.
Publicado 2020

Hidden Markov models lead to higher resolution maps of mutation signature activity in cancer

por Wojtowicz, Damian, Sason, Itay, Huang, Xiaoqing, Kim, Yoo-Ah, Leiserson, Mark D. M., Przytycka, Teresa M., Sharan, Roded
Publicado 2019

Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation

por Du, Xiangjun, Gertz, E. Michael, Wojtowicz, Damian, Zhabinskaya, Dina, Levens, David, Benham, Craig J., Schäffer, Alejandro A., Przytycka, Teresa M.
Publicado 2014

Network-based approaches elucidate differences within APOBEC and clock-like signatures in breast cancer

por Kim, Yoo-Ah, Wojtowicz, Damian, Sarto Basso, Rebecca, Sason, Itay, Robinson, Welles, Hochbaum, Dorit S., Leiserson, Mark D. M., Sharan, Roded, Vadin, Fabio, Przytycka, Teresa M.
Publicado 2020