GeneNotes – A novel information management software for biologists

por Hong, Pengyu, Wong, Wing H
Publicado 2005

An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse

por Kim, Ryung S, Ji, Hongkai, Wong, Wing H
Publicado 2006

A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors

por Ji, Hongkai, Vokes, Steven A., Wong, Wing H.
Publicado 2006

Rare Event Detection Using Error-corrected DNA and RNA Sequencing

por Wong, Wing H., Tong, R. Spencer, Young, Andrew L., Druley, Todd E.
Publicado 2018

Xrare: a machine learning method jointly modeling phenotypes and genetic evidence for rare disease diagnosis

por Li, Qigang, Zhao, Keyan, Bustamante, Carlos D., Ma, Xin, Wong, Wing H.
Publicado 2019

Clustering analysis of SAGE data using a Poisson approach

por Cai, Li, Huang, Haiyan, Blackshaw, Seth, Liu, Jun S, Cepko, Connie, Wong, Wing H
Publicado 2004

An integrated system CisGenome for analyzing ChIP-chip and ChIP-seq data

por Ji, Hongkai, Jiang, Hui, Ma, Wenxiu, Johnson, David S., Myers, Richard M., Wong, Wing H.
Publicado 2008

Modeling Co-Expression across Species for Complex Traits: Insights to the Difference of Human and Mouse Embryonic Stem Cells

por Cai, Jun, Xie, Dan, Fan, Zhewen, Chipperfield, Hiram, Marden, John, Wong, Wing H., Zhong, Sheng
Publicado 2010

Early role for IL6 signaling in iPS generation revealed by heterokaryon RNA-Seq

por Brady, Jennifer J., Li, Mavis, Suthram, Silpa, Jiang, Hui, Wong, Wing H., Blau, Helen M.
Publicado 2013

An Oct4-Sall4-Nanog network controls developmental progression in the pre-implantation mouse embryo

por Tan, Meng How, Au, Kin Fai, Leong, Denise E, Foygel, Kira, Wong, Wing H, Yao, Mylene WM
Publicado 2013

Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools

por Zhou, Bo, Arthur, Joseph G., Ho, Steve S., Pattni, Reenal, Huang, Yiling, Wong, Wing H., Urban, Alexander E.
Publicado 2018

NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks

por Wei, Zheng, Hua, Kui, Wei, Lei, Ma, Shining, Jiang, Rui, Zhang, Xuegong, Li, Yanda, Wong, Wing H., Wang, Xiaowo
Publicado 2023

Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells

por Hong, Feng, Fang, Fang, He, Xuming, Cao, Xiaoyi, Chipperfield, Hiram, Xie, Dan, Wong, Wing H., Ng, Huck H., Zhong, Sheng
Publicado 2009

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications

por Mu, John C., Mohiyuddin, Marghoob, Li, Jian, Bani Asadi, Narges, Gerstein, Mark B., Abyzov, Alexej, Wong, Wing H., Lam, Hugo Y.K.
Publicado 2015

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing

por Mohiyuddin, Marghoob, Mu, John C., Li, Jian, Bani Asadi, Narges, Gerstein, Mark B., Abyzov, Alexej, Wong, Wing H., Lam, Hugo Y.K.
Publicado 2015

Defining Human Embryo Phenotypes by Cohort-Specific Prognostic Factors

por Jun, Sunny H., Choi, Bokyung, Shahine, Lora, Westphal, Lynn M., Behr, Barry, Reijo Pera, Renee A., Wong, Wing H., Yao, Mylene W. M.
Publicado 2008

scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data

por Lin, Yingxin, Wu, Tung-Yu, Chen, Xi, Wan, Sheng, Chao, Brian, Xin, Jingxue, Yang, Jean Y.H., Wong, Wing H., Wang, Y. X. Rachel
Publicado 2023

Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods

por Mu, John C., Tootoonchi Afshar, Pegah, Mohiyuddin, Marghoob, Chen, Xi, Li, Jian, Bani Asadi, Narges, Gerstein, Mark B., Wong, Wing H., Lam, Hugo Y. K.
Publicado 2015

Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data

por Zhang, Xuegong, Lu, Xin, Shi, Qian, Xu, Xiu-qin, Leung, Hon-chiu E, Harris, Lyndsay N, Iglehart, James D, Miron, Alexander, Liu, Jun S, Wong, Wing H
Publicado 2006

Loss of KMT2C reprograms the epigenomic landscape in hPSCs resulting in NODAL overexpression and a failure of hemogenic endothelium specification

por Maurya, Shailendra, Yang, Wei, Tamai, Minori, Zhang, Qiang, Erdmann-Gilmore, Petra, Bystry, Amelia, Martins Rodrigues, Fernanda, Valentine, Mark C., Wong, Wing H, Townsend, Reid, Druley, Todd E.
Publicado 2021