Unraveling the genomic diversity of small eukaryotes

por Fischer, Gilles, Thompson, Dawn, Wortman, Jennifer Russo, Fairhead, Cécile
Publicado 2009

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species

por Lorenzi, Hernan, Thiagarajan, Mathangi, Haas, Brian, Wortman, Jennifer, Hall, Neil, Caler, Elisabet
Publicado 2008

Comparative analysis of programmed cell death pathways in filamentous fungi

por Fedorova, Natalie D, Badger, Jonathan H, Robson, Geoff D, Wortman, Jennifer R, Nierman, William C
Publicado 2005

New resources for functional analysis of omics data for the genus Aspergillus

por Nitsche, Benjamin M, Crabtree, Jonathan, Cerqueira, Gustavo C, Meyer, Vera, Ram, Arthur FJ, Wortman, Jennifer R
Publicado 2011

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily

por Goldberg, Jonathan M., Griggs, Allison D., Smith, Janet L., Haas, Brian J., Wortman, Jennifer R., Zeng, Qiandong
Publicado 2013

Illumina identification of RsrA, a conserved C2H2 transcription factor coordinating the NapA mediated oxidative stress signaling pathway in Aspergillus

por Bok, Jin Woo, Wiemann, Philipp, Garvey, Graeme S, Lim, Fang Yun, Haas, Brian, Wortman, Jennifer, Keller, Nancy P
Publicado 2014

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation

por Galens, Kevin, Orvis, Joshua, Daugherty, Sean, Creasy, Heather H., Angiuoli, Sam, White, Owen, Wortman, Jennifer, Mahurkar, Anup, Giglio, Michelle Gwinn
Publicado 2011

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

por Inglis, Diane O, Binkley, Jonathan, Skrzypek, Marek S, Arnaud, Martha B, Cerqueira, Gustavo C, Shah, Prachi, Wymore, Farrell, Wortman, Jennifer R, Sherlock, Gavin
Publicado 2013

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

por Haas, Brian J, Salzberg, Steven L, Zhu, Wei, Pertea, Mihaela, Allen, Jonathan E, Orvis, Joshua, White, Owen, Buell, C Robin, Wortman, Jennifer R
Publicado 2008

Toward a standard in structural genome annotation for prokaryotes

por Tripp, H. James, Sutton, Granger, White, Owen, Wortman, Jennifer, Pati, Amrita, Mikhailova, Natalia, Ovchinnikova, Galina, Payne, Samuel H., Kyrpides, Nikos C., Ivanova, Natalia
Publicado 2015

Gastrointestinal Tract Microbiome Dynamics Following Treatment with SER-109, an Investigational Oral Microbiome Therapeutic to Reduce the Recurrence of Clostridium difficile Infect...

por Henn, Matthew, Ford, Christopher, O’Brien, Edward, Wortman, Jennifer, Simmons, Sheri, Diao, Liyang, Litcofsky, Kevin, Bernardo, Patricia, Aunins, John, Cook, David, Trucksis, Michele
Publicado 2017

Transcriptional Regulation of Chemical Diversity in Aspergillus fumigatus by LaeA

por Perrin, Robyn M, Fedorova, Natalie D, Bok, Jin Woo, Cramer, Robert A, Wortman, Jennifer R, Kim, H. Stanley, Nierman, William C, Keller, Nancy P
Publicado 2007

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

por Walker, Bruce J., Abeel, Thomas, Shea, Terrance, Priest, Margaret, Abouelliel, Amr, Sakthikumar, Sharadha, Cuomo, Christina A., Zeng, Qiandong, Wortman, Jennifer, Young, Sarah K., Earl, Ashlee M.
Publicado 2014

1641. Treatment of Recurrent Clostridium difficile Infection With SER-109 Reduces Gastrointestinal Carriage of Antimicrobial Resistance Genes

por Ford, Christopher, Henn, Matthew, Bryant, Jessica, Diao, Liyang, Wortman, Jennifer, Tomlinson, Amelia, Litcofsky, Kevin, Bernardo, Patricia, McGovern, Barbara, Aunins, John G, Cook, David N, Trucksis, Michele
Publicado 2018

655. Analysis of Microbiome Diversity and Secondary Bile Acid Synthesis Following SER-109 or Placebo in Patients with First Recurrent or Multiply Recurrent Clostridioides difficile...

por Kelly, Colleen R, Kraft, Colleen S, Straub, Tim, Litcofsky, Kevin, Wortman, Jennifer R, Cohen, Stuart H, Berenson, Charles, McGovern, Barbara, Hasson, Brooke, Hot, Dina, Pardi, Darrell, Ford, Christopher, Henn, Matthew
Publicado 2023

Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus

por Palmer, Kelli L., Godfrey, Paul, Griggs, Allison, Kos, Veronica N., Zucker, Jeremy, Desjardins, Christopher, Cerqueira, Gustavo, Gevers, Dirk, Walker, Suzanne, Wortman, Jennifer, Feldgarden, Michael, Haas, Brian, Birren, Bruce, Gilmore, Michael S.
Publicado 2012

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

por Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D
Publicado 2005

The TIGR Rice Genome Annotation Resource: improvements and new features

por Ouyang, Shu, Zhu, Wei, Hamilton, John, Lin, Haining, Campbell, Matthew, Childs, Kevin, Thibaud-Nissen, Françoise, Malek, Renae L., Lee, Yuandan, Zheng, Li, Orvis, Joshua, Haas, Brian, Wortman, Jennifer, Buell, C. Robin
Publicado 2007

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

por Cerqueira, Gustavo C., Arnaud, Martha B., Inglis, Diane O., Skrzypek, Marek S., Binkley, Gail, Simison, Matt, Miyasato, Stuart R., Binkley, Jonathan, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Sherlock, Gavin, Wortman, Jennifer R.
Publicado 2014

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

por Arnaud, Martha B., Chibucos, Marcus C., Costanzo, Maria C., Crabtree, Jonathan, Inglis, Diane O., Lotia, Adil, Orvis, Joshua, Shah, Prachi, Skrzypek, Marek S., Binkley, Gail, Miyasato, Stuart R., Wortman, Jennifer R., Sherlock, Gavin
Publicado 2010