Comparative analysis of programmed cell death pathways in filamentous fungi

por Fedorova, Natalie D, Badger, Jonathan H, Robson, Geoff D, Wortman, Jennifer R, Nierman, William C
Publicado 2005

New resources for functional analysis of omics data for the genus Aspergillus

por Nitsche, Benjamin M, Crabtree, Jonathan, Cerqueira, Gustavo C, Meyer, Vera, Ram, Arthur FJ, Wortman, Jennifer R
Publicado 2011

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily

por Goldberg, Jonathan M., Griggs, Allison D., Smith, Janet L., Haas, Brian J., Wortman, Jennifer R., Zeng, Qiandong
Publicado 2013

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

por Inglis, Diane O, Binkley, Jonathan, Skrzypek, Marek S, Arnaud, Martha B, Cerqueira, Gustavo C, Shah, Prachi, Wymore, Farrell, Wortman, Jennifer R, Sherlock, Gavin
Publicado 2013

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

por Haas, Brian J, Salzberg, Steven L, Zhu, Wei, Pertea, Mihaela, Allen, Jonathan E, Orvis, Joshua, White, Owen, Buell, C Robin, Wortman, Jennifer R
Publicado 2008

Transcriptional Regulation of Chemical Diversity in Aspergillus fumigatus by LaeA

por Perrin, Robyn M, Fedorova, Natalie D, Bok, Jin Woo, Cramer, Robert A, Wortman, Jennifer R, Kim, H. Stanley, Nierman, William C, Keller, Nancy P
Publicado 2007

655. Analysis of Microbiome Diversity and Secondary Bile Acid Synthesis Following SER-109 or Placebo in Patients with First Recurrent or Multiply Recurrent Clostridioides difficile...

por Kelly, Colleen R, Kraft, Colleen S, Straub, Tim, Litcofsky, Kevin, Wortman, Jennifer R, Cohen, Stuart H, Berenson, Charles, McGovern, Barbara, Hasson, Brooke, Hot, Dina, Pardi, Darrell, Ford, Christopher, Henn, Matthew
Publicado 2023

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

por Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D
Publicado 2005

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

por Cerqueira, Gustavo C., Arnaud, Martha B., Inglis, Diane O., Skrzypek, Marek S., Binkley, Gail, Simison, Matt, Miyasato, Stuart R., Binkley, Jonathan, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Sherlock, Gavin, Wortman, Jennifer R.
Publicado 2014

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

por Arnaud, Martha B., Chibucos, Marcus C., Costanzo, Maria C., Crabtree, Jonathan, Inglis, Diane O., Lotia, Adil, Orvis, Joshua, Shah, Prachi, Skrzypek, Marek S., Binkley, Gail, Miyasato, Stuart R., Wortman, Jennifer R., Sherlock, Gavin
Publicado 2010

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

por Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.
Publicado 2012

Comparative Genomics of Recent Shiga Toxin-Producing Escherichia coli O104:H4: Short-Term Evolution of an Emerging Pathogen

por Grad, Yonatan H., Godfrey, Paul, Cerquiera, Gustavo C., Mariani-Kurkdjian, Patricia, Gouali, Malika, Bingen, Edouard, Shea, Terrence P., Haas, Brian J., Griggs, Allison, Young, Sarah, Zeng, Qiandong, Lipsitch, Marc, Waldor, Matthew K., Weill, François-Xavier, Wortman, Jennifer R., Hanage, William P.
Publicado 2013

Draft genome sequence of the ricin-producing oilseed castor bean

por Chan, Agnes P., Crabtree, Jonathan, Zhao, Qi, Lorenzi, Hernan, Orvis, Joshua, Puiu, Daniela, Melake-Berhan, Admasu, Jones, Kristine M., Redman, Julia, Chen, Grace, Cahoon, Edgar B., Gedil, Melaku, Stanke, Mario, Haas, Brian J., Wortman, Jennifer R., Fraser-Liggett, Claire M., Ravel, Jacques, Rabinowicz, Pablo D.
Publicado 2010

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

por Desjardins, Christopher A., Cerqueira, Gustavo C., Goldberg, Jonathan M., Hotopp, Julie C. Dunning, Haas, Brian J., Zucker, Jeremy, Ribeiro, Jose’ M.C., Saif, Sakina, Levin, Joshua Z., Fan, Lin, Zeng, Qiandong, Russ, Carsten, Wortman, Jennifer R., Fink, Doran L., Birren, Bruce W., Nutman, Thomas B.
Publicado 2013

Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure

por Coyne, Robert S, Thiagarajan, Mathangi, Jones, Kristie M, Wortman, Jennifer R, Tallon, Luke J, Haas, Brian J, Cassidy-Hanley, Donna M, Wiley, Emily A, Smith, Joshua J, Collins, Kathleen, Lee, Suzanne R, Couvillion, Mary T, Liu, Yifan, Garg, Jyoti, Pearlman, Ronald E, Hamilton, Eileen P, Orias, Eduardo, Eisen, Jonathan A, Methé, Barbara A
Publicado 2008

A Phase 1b Safety Study of SER-287, a Spore-Based Microbiome Therapeutic, for Active Mild to Moderate Ulcerative Colitis

por Henn, Matthew R., O’Brien, Edward J., Diao, Liyang, Feagan, Brian G., Sandborn, William J., Huttenhower, Curtis, Wortman, Jennifer R., McGovern, Barbara H., Wang-Weigand, Sherry, Lichter, David I., Chafee, Meghan, Ford, Christopher B., Bernardo, Patricia, Zhao, Peng, Simmons, Sheri, Tomlinson, Amelia D., Cook, David N., Pomerantz, Roger J., Misra, Bharat K., Auninš, John G., Trucksis, Michele
Publicado 2021

SER-109, an Investigational Microbiome Drug to Reduce Recurrence After Clostridioides difficile Infection: Lessons Learned From a Phase 2 Trial

por McGovern, Barbara H, Ford, Christopher B, Henn, Matthew R, Pardi, Darrell S, Khanna, Sahil, Hohmann, Elizabeth L, O’Brien, Edward J, Desjardins, Christopher A, Bernardo, Patricia, Wortman, Jennifer R, Lombardo, Mary-Jane, Litcofsky, Kevin D, Winkler, Jonathan A, McChalicher, Christopher W J, Li, Sunny S, Tomlinson, Amelia D, Nandakumar, Madhumitha, Cook, David N, Pomerantz, Roger J, Auninš, John G, Trucksis, Michele
Publicado 2020

Genome Sequence of Babesia bovis and Comparative Analysis of Apicomplexan Hemoprotozoa

por Brayton, Kelly A, Lau, Audrey O. T, Herndon, David R, Hannick, Linda, Kappmeyer, Lowell S, Berens, Shawn J, Bidwell, Shelby L, Brown, Wendy C, Crabtree, Jonathan, Fadrosh, Doug, Feldblum, Tamara, Forberger, Heather A, Haas, Brian J, Howell, Jeanne M, Khouri, Hoda, Koo, Hean, Mann, David J, Norimine, Junzo, Paulsen, Ian T, Radune, Diana, Ren, Qinghu, Smith, Roger K, Suarez, Carlos E, White, Owen, Wortman, Jennifer R, Knowles, Donald P, McElwain, Terry F, Nene, Vishvanath M
Publicado 2007

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

por Hamilton, Eileen P, Kapusta, Aurélie, Huvos, Piroska E, Bidwell, Shelby L, Zafar, Nikhat, Tang, Haibao, Hadjithomas, Michalis, Krishnakumar, Vivek, Badger, Jonathan H, Caler, Elisabet V, Russ, Carsten, Zeng, Qiandong, Fan, Lin, Levin, Joshua Z, Shea, Terrance, Young, Sarah K, Hegarty, Ryan, Daza, Riza, Gujja, Sharvari, Wortman, Jennifer R, Birren, Bruce W, Nusbaum, Chad, Thomas, Jainy, Carey, Clayton M, Pritham, Ellen J, Feschotte, Cédric, Noto, Tomoko, Mochizuki, Kazufumi, Papazyan, Romeo, Taverna, Sean D, Dear, Paul H, Cassidy-Hanley, Donna M, Xiong, Jie, Miao, Wei, Orias, Eduardo, Coyne, Robert S
Publicado 2016

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

por Fedorova, Natalie D., Khaldi, Nora, Joardar, Vinita S., Maiti, Rama, Amedeo, Paolo, Anderson, Michael J., Crabtree, Jonathan, Silva, Joana C., Badger, Jonathan H., Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J., Dyer, Paul S., Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M., Haas, Brian J., Inman, Jason M., Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M., Sundaram, Jaideep P., Sutton, Granger, Turner, Geoff, Venter, J. Craig, White, Owen R., Whitty, Brett R., Youngman, Phil, Wolfe, Kenneth H., Goldman, Gustavo H., Wortman, Jennifer R., Jiang, Bo, Denning, David W., Nierman, William C.
Publicado 2008