Analysis of long and short enhancers in melanoma cell states

por Mauduit, David, Taskiran, Ibrahim Ihsan, Minnoye, Liesbeth, de Waegeneer, Maxime, Christiaens, Valerie, Hulselmans, Gert, Demeulemeester, Jonas, Wouters, Jasper, Aerts, Stein
Publicado 2021

Human Pancreatic Cancer Contains a Side Population Expressing Cancer Stem Cell-Associated and Prognostic Genes

por Van den broeck, Anke, Vankelecom, Hugo, Van Delm, Wouter, Gremeaux, Lies, Wouters, Jasper, Allemeersch, Joke, Govaere, Olivier, Roskams, Tania, Topal, Baki
Publicado 2013

The effect of L-PRF membranes on bone healing in rabbit tibiae bone defects: micro-CT and biomarker results

por Faot, Fernanda, Deprez, Sanne, Vandamme, Katleen, Camargos, Germana V., Pinto, Nelson, Wouters, Jasper, van den Oord, Joost, Quirynen, Marc, Duyck, Joke
Publicado 2017

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

por Bravo González-Blas, Carmen, De Winter, Seppe, Hulselmans, Gert, Hecker, Nikolai, Matetovici, Irina, Christiaens, Valerie, Poovathingal, Suresh, Wouters, Jasper, Aibar, Sara, Aerts, Stein
Publicado 2023

Tyrosine-Dependent Phenotype Switching Occurs Early in Many Primary Melanoma Cultures Limiting Their Translational Value

por Najem, Ahmad, Wouters, Jasper, Krayem, Mohammad, Rambow, Florian, Sabbah, Malak, Sales, François, Awada, Ahmad, Aerts, Stein, Journe, Fabrice, Marine, Jean-Christophe, Ghanem, Ghanem E.
Publicado 2021

The Human Melanoma Side Population Displays Molecular and Functional Characteristics of Enriched Chemoresistance and Tumorigenesis

por Wouters, Jasper, Stas, Marguerite, Gremeaux, Lies, Govaere, Olivier, Van den broeck, Anke, Maes, Hannelore, Agostinis, Patrizia, Roskams, Tania, van den Oord, Joost J., Vankelecom, Hugo
Publicado 2013

Interpretation of allele-specific chromatin accessibility using cell state–aware deep learning

por Atak, Zeynep Kalender, Taskiran, Ibrahim Ihsan, Demeulemeester, Jonas, Flerin, Christopher, Mauduit, David, Minnoye, Liesbeth, Hulselmans, Gert, Christiaens, Valerie, Ghanem, Ghanem-Elias, Wouters, Jasper, Aerts, Stein
Publicado 2021

Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell multiplexing

por Bosisio, Francesca Maria, Antoranz, Asier, van Herck, Yannick, Bolognesi, Maddalena Maria, Marcelis, Lukas, Chinello, Clizia, Wouters, Jasper, Magni, Fulvio, Alexopoulos, Leonidas, Stas, Marguerite, Boecxstaens, Veerle, Bechter, Oliver, Cattoretti, Giorgio, van den Oord, Joost
Publicado 2020

Low expression of pro-apoptotic proteins Bax, Bak and Smac indicates prolonged progression-free survival in chemotherapy-treated metastatic melanoma

por Guttà, Cristiano, Rahman, Arman, Aura, Claudia, Dynoodt, Peter, Charles, Emilie M., Hirschenhahn, Elodie, Joseph, Jesuchristopher, Wouters, Jasper, de Chaumont, Ciaran, Rafferty, Mairin, Warren, Madhuri, van den Oord, Joost J., Gallagher, William M., Rehm, Markus
Publicado 2020

The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

por Jacobs, Jelle, Atkins, Mardelle, Davie, Kristofer, Imrichova, Hana, Romanelli, Lucia, Christiaens, Valerie, Hulselmans, Gert, Potier, Delphine, Wouters, Jasper, Taskiran, Ibrahim Ihsan, Paciello, Giulia, González-Blas, Carmen Bravo, Koldere, Duygu, Aibar, Sara, Halder, Georg, Aerts, Stein
Publicado 2018

Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads

por De Rop, Florian V, Ismail, Joy N, Bravo González-Blas, Carmen, Hulselmans, Gert J, Flerin, Christopher Campbell, Janssens, Jasper, Theunis, Koen, Christiaens, Valerie M, Wouters, Jasper, Marcassa, Gabriele, de Wit, Joris, Poovathingal, Suresh, Aerts, Stein
Publicado 2022

Expression profiling of budding cells in colorectal cancer reveals an EMT-like phenotype and molecular subtype switching

por De Smedt, Linde, Palmans, Sofie, Andel, Daan, Govaere, Olivier, Boeckx, Bram, Smeets, Dominiek, Galle, Eva, Wouters, Jasper, Barras, David, Suffiotti, Madeleine, Dekervel, Jeroen, Tousseyn, Thomas, De Hertogh, Gert, Prenen, Hans, Tejpar, Sabine, Lambrechts, Diether, Sagaert, Xavier
Publicado 2017

SCENIC: Single-cell regulatory network inference and clustering

por Aibar, Sara, González-Blas, Carmen Bravo, Moerman, Thomas, Huynh-Thu, Vân Anh, Imrichova, Hana, Hulselmans, Gert, Rambow, Florian, Marine, Jean-Christophe, Geurts, Pierre, Aerts, Jan, van den Oord, Joost, Atak, Zeynep Kalender, Wouters, Jasper, Aerts, Stein
Publicado 2017

Cross-species analysis of enhancer logic using deep learning

por Minnoye, Liesbeth, Taskiran, Ibrahim Ihsan, Mauduit, David, Fazio, Maurizio, Van Aerschot, Linde, Hulselmans, Gert, Christiaens, Valerie, Makhzami, Samira, Seltenhammer, Monika, Karras, Panagiotis, Primot, Aline, Cadieu, Edouard, van Rooijen, Ellen, Marine, Jean-Christophe, Egidy, Giorgia, Ghanem, Ghanem-Elias, Zon, Leonard, Wouters, Jasper, Aerts, Stein
Publicado 2020

A Multi-Omics Analysis of Metastatic Melanoma Identifies a Germinal Center-Like Tumor Microenvironment in HLA-DR-Positive Tumor Areas

por Gadeyne, Laura, Van Herck, Yannick, Milli, Giorgia, Atak, Zeynep Kalender, Bolognesi, Maddalena Maria, Wouters, Jasper, Marcelis, Lukas, Minia, Angeliki, Pliaka, Vaia, Roznac, Jan, Alexopoulos, Leonidas G., Cattoretti, Giorgio, Bechter, Oliver, Oord, Joost Van Den, De Smet, Frederik, Antoranz, Asier, Bosisio, Francesca Maria
Publicado 2021

Keratin 19: a key role player in the invasion of human hepatocellular carcinomas

por Govaere, Olivier, Komuta, Mina, Berkers, Johannes, Spee, Bart, Janssen, Carl, de Luca, Francesca, Katoonizadeh, Aezam, Wouters, Jasper, van Kempen, Léon C, Durnez, Anne, Verslype, Chris, De Kock, Joery, Rogiers, Vera, van Grunsven, Leo A, Topal, Baki, Pirenne, Jacques, Vankelecom, Hugo, Nevens, Frederik, van den Oord, Joost, Pinzani, Massimo, Roskams, Tania
Publicado 2014

Comprehensive DNA methylation study identifies novel progression-related and prognostic markers for cutaneous melanoma

por Wouters, Jasper, Vizoso, Miguel, Martinez-Cardus, Anna, Carmona, F. Javier, Govaere, Olivier, Laguna, Teresa, Joseph, Jesuchristopher, Dynoodt, Peter, Aura, Claudia, Foth, Mona, Cloots, Roy, van den Hurk, Karin, Balint, Balazs, Murphy, Ian G., McDermott, Enda W., Sheahan, Kieran, Jirström, Karin, Nodin, Bjorn, Mallya-Udupi, Girish, van den Oord, Joost J., Gallagher, William M., Esteller, Manel
Publicado 2017

BNIP3 promotes HIF‐1α‐driven melanoma growth by curbing intracellular iron homeostasis

por Vara‐Pérez, Mónica, Rossi, Matteo, Van den Haute, Chris, Maes, Hannelore, Sassano, Maria Livia, Venkataramani, Vivek, Michalke, Bernhard, Romano, Erminia, Rillaerts, Kristine, Garg, Abhishek D, Schepkens, Corentin, Bosisio, Francesca M, Wouters, Jasper, Oliveira, Ana Isabel, Vangheluwe, Peter, Annaert, Wim, Swinnen, Johannes V, Colet, Jean Marie, van den Oord, Joost J, Fendt, Sarah‐Maria, Mazzone, Massimiliano, Agostinis, Patrizia
Publicado 2021