Detection of plasmid contigs in draft genome assemblies using customized Kraken databases

por Gomi, Ryota, Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

Comment on: MDR carbapenemase-producing Klebsiella pneumoniae of the hypervirulence-associated ST23 clone in Poland, 2009–19

por Lam, Margaret M C, Holt, Kathryn E, Wyres, Kelly L
Publicado 2023

Comment on: CG258 Klebsiella pneumoniae isolates without β-lactam resistance at the onset of the carbapenem-resistant Enterobacteriaceae epidemic in New York City

por Wyres, Kelly L, Lam, Margaret M C, Holt, Kathryn E
Publicado 2019

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes

por Wick, Ryan R., Heinz, Eva, Holt, Kathryn E., Wyres, Kelly L.
Publicado 2018

Recovery of small plasmid sequences via Oxford Nanopore sequencing

por Wick, Ryan R., Judd, Louise M., Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

por Holt, Kathryn E., Lassalle, Florent, Wyres, Kelly L., Wick, Ryan, Mostowy, Rafał J.
Publicado 2020

Correction to: Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

por Holt, Kathryn E., Lassalle, Florent, Wyres, Kelly L., Wick, Ryan, Mostowy, Rafał J.
Publicado 2022

Environmental Factors Determining the Epidemiology and Population Genetic Structure of the Bacillus cereus Group in the Field

por Raymond, Ben, Wyres, Kelly L., Sheppard, Samuel K., Ellis, Richard J., Bonsall, Michael B.
Publicado 2010

Identification of Acinetobacter baumannii loci for capsular polysaccharide (KL) and lipooligosaccharide outer core (OCL) synthesis in genome assemblies using curated reference data...

por Wyres, Kelly L., Cahill, Sarah M., Holt, Kathryn E., Hall, Ruth M., Kenyon, Johanna J.
Publicado 2020

Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia

por Stewart, James, Judd, Louise M., Jenney, Adam, Holt, Kathryn E., Wyres, Kelly L., Hawkey, Jane
Publicado 2022

Kaptive 2.0: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex

por Lam, Margaret M. C., Wick, Ryan R., Judd, Louise M., Holt, Kathryn E., Wyres, Kelly L.
Publicado 2022

WGS Analysis and Interpretation in Clinical and Public Health Microbiology Laboratories: What Are the Requirements and How Do Existing Tools Compare?

por Wyres, Kelly L., Conway, Thomas C., Garg, Saurabh, Queiroz, Carlos, Reumann, Matthias, Holt, Kathryn, Rusu, Laura I.
Publicado 2014

The diversity of Klebsiella pneumoniae surface polysaccharides

por Follador, Rainer, Heinz, Eva, Wyres, Kelly L., Ellington, Matthew J., Kowarik, Michael, Holt, Kathryn E., Thomson, Nicholas R.
Publicado 2016

Identification of Klebsiella capsule synthesis loci from whole genome data

por Wyres, Kelly L., Wick, Ryan R., Gorrie, Claire, Jenney, Adam, Follador, Rainer, Thomson, Nicholas R., Holt, Kathryn E.
Publicado 2016

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

por Lam, Margaret M. C., Wick, Ryan R., Watts, Stephen C., Cerdeira, Louise T., Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

Correction: Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974

por Wyres, Kelly L., van Tonder, Andries, Lambertsen, Lotte M., Hakenbeck, Regine, Parkhill, Julian, Bentley, Stephen D., Brueggemann, Angela B.
Publicado 2023

Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974

por Wyres, Kelly L, van Tonder, Andries, Lambertsen, Lotte M, Hakenbeck, Regine, Parkhill, Julian, Bentley, Stephen D, Brueggemann, Angela B
Publicado 2013

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

por Lam, Margaret M. C., Wyres, Kelly L., Judd, Louise M., Wick, Ryan R., Jenney, Adam, Brisse, Sylvain, Holt, Kathryn E.
Publicado 2018

Trycycler: consensus long-read assemblies for bacterial genomes

por Wick, Ryan R., Judd, Louise M., Cerdeira, Louise T., Hawkey, Jane, Méric, Guillaume, Vezina, Ben, Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

Oral fosfomycin activity against Klebsiella pneumoniae in a dynamic bladder infection in vitro model

por Abbott, Iain J., van Gorp, Elke, Wyres, Kelly L., Wallis, Steven C., Roberts, Jason A., Meletiadis, Joseph, Peleg, Anton Y.
Publicado 2022