Translating the human microbiome: a path to improving health

por Xavier, Ramnik J.
Publicado 2021

Untangling the CD4 T cell response to the microbiota

por Mayassi, Toufic, Xavier, Ramnik J.
Publicado 2023

Dissecting the human microbiome with single-cell genomics

por Tolonen, Andrew C., Xavier, Ramnik J.
Publicado 2017

Gastrointestinal Diseases

por Xavier, Ramnik J, Thomas, Harry J
Publicado 2013

Inflammatory Bowel Disease at the Intersection of Autophagy and Immunity: Insights from Human Genetics

por Nedelsky, Natalia, Kuballa, Petric, Castoreno, Adam B., Xavier, Ramnik J.
Publicado 2019

Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools

por Jiang, Xiaofang, Hall, Andrew Brantley, Xavier, Ramnik J., Alm, Eric J.
Publicado 2019

Inflammatory Bowel Disease at the Intersection of Autophagy and Immunity: Insights from Human Genetics

por Nedelsky, Natalia B., Kuballa, Petric, Castoreno, Adam B., Xavier, Ramnik J.
Publicado 2013

Impaired Autophagy of an Intracellular Pathogen Induced by a Crohn's Disease Associated ATG16L1 Variant

por Kuballa, Petric, Huett, Alan, Rioux, John D., Daly, Mark J., Xavier, Ramnik J.
Publicado 2008

Multivariate inference of pathway activity in host immunity and response to therapeutics

por Goel, Gautam, Conway, Kara L., Jaeger, Martin, Netea, Mihai G., Xavier, Ramnik J.
Publicado 2014

ConStrains identifies microbial strains in metagenomic datasets

por Luo, Chengwei, Knight, Rob, Siljander, Heli, Knip, Mikael, Xavier, Ramnik J, Gevers, Dirk
Publicado 2015

SAC1 regulates autophagosomal phosphatidylinositol-4-phosphate for xenophagy-directed bacterial clearance

por Liu, Kai, Kong, Lingjia, Graham, Daniel B., Carey, Kimberly L., Xavier, Ramnik J.
Publicado 2021

Bacterial and Host Determinants of MAL Activation upon EPEC Infection: The Roles of Tir, ABRA, and FLRT3

por Heath, Robert J. W., Leong, John M., Visegrády, Balázs, Machesky, Laura M., Xavier, Ramnik J.
Publicado 2011

Ruminococcus gnavus, a member of the human gut microbiome associated with Crohn’s disease, produces an inflammatory polysaccharide

por Henke, Matthew T., Kenny, Douglas J., Cassilly, Chelsi D., Vlamakis, Hera, Xavier, Ramnik J., Clardy, Jon
Publicado 2019

Capsular polysaccharide correlates with immune response to the human gut microbe Ruminococcus gnavus

por Henke, Matthew T., Brown, Eric M., Cassilly, Chelsi D., Vlamakis, Hera, Xavier, Ramnik J., Clardy, Jon
Publicado 2021

An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia

por Benita, Yair, Kikuchi, Hirotoshi, Smith, Andrew D., Zhang, Michael Q., Chung, Daniel C., Xavier, Ramnik J.
Publicado 2009

HCV Causes Chronic Endoplasmic Reticulum Stress Leading to Adaptation and Interference with the Unfolded Protein Response

por Merquiol, Emmanuelle, Uzi, Dotan, Mueller, Tobias, Goldenberg, Daniel, Nahmias, Yaakov, Xavier, Ramnik J., Tirosh, Boaz, Shibolet, Oren
Publicado 2011

Functional profiling of the gut microbiome in disease-associated inflammation

por Börnigen, Daniela, Morgan, Xochitl C, Franzosa, Eric A, Ren, Boyu, Xavier, Ramnik J, Garrett, Wendy S, Huttenhower, Curtis
Publicado 2013

A Cardiolipin from Muribaculum intestinale Induces Antigen-Specific Cytokine Responses

por Bang, Sunghee, Shin, Yern-Hyerk, Ma, Xiao, Park, Sung-Moo, Graham, Daniel B., Xavier, Ramnik J., Clardy, Jon
Publicado 2023

Collinsella aerofaciens Produces a pH-Responsive Lipid Immunogen

por Kwon, Jaeyoung, Bae, Munhyung, Szamosvári, Dávid, Cassilly, Chelsi D., Bolze, Andrew S., Jackson, David R., Xavier, Ramnik J., Clardy, Jon
Publicado 2023

Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method

por Maranga, Mary, Szczerbiak, Pawel, Bezshapkin, Valentyn, Gligorijevic, Vladimir, Chandler, Chris, Bonneau, Richard, Xavier, Ramnik J., Vatanen, Tommi, Kosciolek, Tomasz
Publicado 2023