CoreProbe: A Novel Algorithm for Estimating Relative Abundance Based on Metagenomic Reads

por Ai, Dongmei, Pan, Hongfei, Huang, Ruocheng, Xia, Li C.
Publicado 2018

Constructing the Microbial Association Network from Large-Scale Time Series Data Using Granger Causality

por Ai, Dongmei, Li, Xiaoxin, Liu, Gang, Liang, Xiaoyi, Xia, Li C.
Publicado 2019

Association network analysis identifies enzymatic components of gut microbiota that significantly differ between colorectal cancer patients and healthy controls

por Ai, Dongmei, Pan, Hongfei, Li, Xiaoxin, Wu, Min, Xia, Li C.
Publicado 2019

The statistical power of k-mer based aggregative statistics for alignment-free detection of horizontal gene transfer

por Huang, Guan-Da, Liu, Xue-Mei, Huang, Tian-Lai, Xia, Li- C.
Publicado 2019

Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads

por Xia, Li C., Cram, Jacob A., Chen, Ting, Fuhrman, Jed A., Sun, Fengzhu
Publicado 2011

Using Decision Tree Aggregation with Random Forest Model to Identify Gut Microbes Associated with Colorectal Cancer

por Ai, Dongmei, Pan, Hongfei, Han, Rongbao, Li, Xiaoxin, Liu, Gang, Xia, Li C.
Publicado 2019

Identifying Gut Microbiota Associated With Colorectal Cancer Using a Zero-Inflated Lognormal Model

por Ai, Dongmei, Pan, Hongfei, Li, Xiaoxin, Gao, Yingxin, Liu, Gang, Xia, Li C.
Publicado 2019

Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis

por Ai, Dongmei, Li, Xiaoxin, Pan, Hongfei, Chen, Jiamin, Cram, Jacob A., Xia, Li C.
Publicado 2019

Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains

por Xia, Li C., Ai, Dongmei, Cram, Jacob A., Liang, Xiaoyi, Fuhrman, Jed A., Sun, Fengzhu
Publicado 2015

Joint Analysis of Microbial and Immune Cell Abundance in Liver Cancer Tissue Using a Gene Expression Profile Deconvolution Algorithm Combined With Foreign Read Remapping

por Ai, Dongmei, Xing, Yonglian, Zhang, Qingchuan, Wang, Yishu, Liu, Xiuqin, Liu, Gang, Xia, Li C.
Publicado 2022

Regularized survival learning and cross-database analysis enabled identification of colorectal cancer prognosis-related immune genes

por Ai, Dongmei, Wang, Mingmei, Zhang, Qingchuan, Cheng, Longwei, Wang, Yishu, Liu, Xiuqin, Xia, Li C.
Publicado 2023

CRISPR–Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis

por Shin, GiWon, Grimes, Susan M., Lee, HoJoon, Lau, Billy T., Xia, Li C., Ji, Hanlee P.
Publicado 2017

Identification of large rearrangements in cancer genomes with barcode linked reads

por Xia, Li C, Bell, John M, Wood-Bouwens, Christina, Chen, Jiamin J, Zhang, Nancy R, Ji, Hanlee P
Publicado 2018

Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes

por Shin, GiWon, Greer, Stephanie U, Xia, Li C, Lee, HoJoon, Zhou, Jun, Boles, T Christian, Ji, Hanlee P
Publicado 2019

A genome-wide approach for detecting novel insertion-deletion variants of mid-range size

por Xia, Li C., Sakshuwong, Sukolsak, Hopmans, Erik S., Bell, John M., Grimes, Susan M., Siegmund, David O., Ji, Hanlee P., Zhang, Nancy R.
Publicado 2016

Transcriptional Changes in CD16+ Monocytes May Contribute to the Pathogenesis of COVID-19

por Chilunda, Vanessa, Martinez-Aguado, Pablo, Xia, Li C., Cheney, Laura, Murphy, Aniella, Veksler, Veronica, Ruiz, Vanessa, Calderon, Tina M., Berman, Joan W.
Publicado 2021

Prediction of breast cancer risk based on flow variant analysis of circulating peripheral blood mononuclear cells

por Loke, Johnny, Alim, Ishraq, Yam, Sarah, Klugman, Susan, Xia, Li C., Gruber, Dorota, Tegay, David, LaBella, Andrea, Onel, Kenan, Ostrer, Harry
Publicado 2022

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

por Xia, Li C, Steele, Joshua A, Cram, Jacob A, Cardon, Zoe G, Simmons, Sheri L, Vallino, Joseph J, Fuhrman, Jed A, Sun, Fengzhu
Publicado 2011

Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy

por Bell, John M., Lau, Billy T., Greer, Stephanie U., Wood-Bouwens, Christina, Xia, Li C., Connolly, Ian D., Gephart, Melanie H., Ji, Hanlee P.
Publicado 2017

Emergence of Hemagglutinin Mutations During the Course of Influenza Infection

por Cushing, Anna, Kamali, Amanda, Winters, Mark, Hopmans, Erik S., Bell, John M., Grimes, Susan M., Xia, Li C., Zhang, Nancy R., Moss, Ronald B., Holodniy, Mark, Ji, Hanlee P.
Publicado 2015