S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types

por Xiang, Guanjue, Giardine, Belinda M, Mahony, Shaun, Zhang, Yu, Hardison, Ross C
Publicado 2021

S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data

por Xiang, Guanjue, Keller, Cheryl A, Giardine, Belinda, An, Lin, Li, Qunhua, Zhang, Yu, Hardison, Ross C
Publicado 2020

OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries

por An, Lin, Yang, Tao, Yang, Jiahao, Nuebler, Johannes, Xiang, Guanjue, Hardison, Ross C., Li, Qunhua, Zhang, Yu
Publicado 2019

CLIMB: High-dimensional association detection in large scale genomic data

por Koch, Hillary, Keller, Cheryl A., Xiang, Guanjue, Giardine, Belinda, Zhang, Feipeng, Wang, Yicheng, Hardison, Ross C., Li, Qunhua
Publicado 2022

Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation

por Xiang, Guanjue, Giardine, Belinda, An, Lin, Sun, Chen, Keller, Cheryl A., Heuston, Elisabeth F., Anderson, Stacie M., Kirby, Martha, Bodine, David, Zhang, Yu, Hardison, Ross C.
Publicado 2023

MetaTiME integrates single-cell gene expression to characterize the meta-components of the tumor immune microenvironment

por Zhang, Yi, Xiang, Guanjue, Jiang, Alva Yijia, Lynch, Allen, Zeng, Zexian, Wang, Chenfei, Zhang, Wubing, Fan, Jingyu, Kang, Jiajinlong, Gu, Shengqing Stan, Wan, Changxin, Zhang, Boning, Liu, X. Shirley, Brown, Myles, Meyer, Clifford A.
Publicado 2023

Distinct properties and functions of CTCF revealed by a rapidly inducible degron system

por Luan, Jing, Xiang, Guanjue, Gómez-García, Pablo Aurelio, Tome, Jacob M., Zhang, Zhe, Vermunt, Marit W., Zhang, Haoyue, Huang, Anran, Keller, Cheryl A., Giardine, Belinda M., Zhang, Yu, Lan, Yemin, Lis, John T., Lakadamyali, Melike, Hardison, Ross C., Blobel, Gerd A.
Publicado 2021

Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells

por Hardison, Ross C., Zhang, Yu, Keller, Cheryl A., Xiang, Guanjue, Heuston, Elisabeth F., An, Lin, Lichtenberg, Jens, Giardine, Belinda M., Bodine, David, Mahony, Shaun, Li, Qunhua, Yue, Feng, Weiss, Mitchell J., Blobel, Gerd A., Taylor, James, Hughes, Jim, Higgs, Douglas R., Göttgens, Berthold
Publicado 2019

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

por Xiang, Guanjue, Keller, Cheryl A., Heuston, Elisabeth, Giardine, Belinda M., An, Lin, Wixom, Alexander Q., Miller, Amber, Cockburn, April, Sauria, Michael E.G., Weaver, Kathryn, Lichtenberg, Jens, Göttgens, Berthold, Li, Qunhua, Bodine, David, Mahony, Shaun, Taylor, James, Blobel, Gerd A., Weiss, Mitchell J., Cheng, Yong, Yue, Feng, Hughes, Jim, Higgs, Douglas R., Zhang, Yu, Hardison, Ross C.
Publicado 2020